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Aliases for SNORA70D Gene

Subcategory (RNA class) for SNORA70D Gene

snoRNA

Quality Score for this RNA gene is

5

Aliases for SNORA70D Gene

  • Small Nucleolar RNA, H/ACA Box 70D 2 3
  • Small Nucleolar RNA, H/ACA Box 70D (Retrotransposed) 2 3
  • U70D 3

External Ids for SNORA70D Gene

ORGUL Members for SNORA70D Gene

Summaries for SNORA70D Gene

GeneCards Summary for SNORA70D Gene

SNORA70D (Small Nucleolar RNA, H/ACA Box 70D) is a RNA Gene, and belongs to snoRNA RNA class.

fRNAdb sequence ontologies for SNORA70D Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA70: snoRNA U70 seems to be exclusive to mammals and is a member of the H/ACA class of snoRNA which contain H (ANANNA) and ACA box motifs. H/ACA box snoRNAs are involved in the conversion of uridines to pseudouridines (5-ribosyluracil) a constituent of structural RNAs (transfer, ribosomal, small nuclear, and small nucleolar) [1,2].

View fRNAdb secondary structures for SNORA70D

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA70D Gene

Genomics for SNORA70D Gene

Genomic Location for SNORA70D Gene

Start:
71,698,567 bp from pter
End:
71,698,701 bp from pter
Size:
135 bases
Orientation:
Minus strand

Genomic View for SNORA70D Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA70D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA70D Gene

ORGUL Member Location for SNORA70D Gene

ORGUL Member Location for SNORA70D gene

No data available for Regulatory Elements for SNORA70D Gene

Proteins for SNORA70D Gene

Post-translational modifications for SNORA70D Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA70D Gene

Domains for SNORA70D Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SNORA70D Gene

Function for SNORA70D Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA70D Gene

Localization for SNORA70D Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORA70D Gene

Pathways for SNORA70D Gene

SuperPathways for SNORA70D Gene

No Data Available

Interacting Proteins for SNORA70D Gene

Gene Ontology (GO) - Biological Process for SNORA70D Gene

None

No data available for Pathways by source for SNORA70D Gene

Transcripts for SNORA70D Gene

fRNAdb Secondary structures for SNORA70D Gene

  • RF00156;SNORA70;DAAB013739299.1/461-547

mRNA/cDNA for SNORA70D Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA70D Gene

No ASD Table

Relevant External Links for SNORA70D Gene

GeneLoc Exon Structure for
SNORA70D
ECgene alternative splicing isoforms for
SNORA70D

Expression for SNORA70D Gene

mRNA expression in normal human tissues for SNORA70D Gene

SOURCE GeneReport for Unigene cluster for SNORA70D Gene Hs.725116

genes like me logo Genes that share expressions with SNORA70D: view

Orthologs for SNORA70D Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA70D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA70 37
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA70 37
  • 68 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22163 37
  • 62 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA70 37
  • 71 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA70 37
  • 57 (a)
ManyToMany
Species with no ortholog for SNORA70D:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA70D Gene

ENSEMBL:
Gene Tree for SNORA70D (if available)
TreeFam:
Gene Tree for SNORA70D (if available)

Paralogs for SNORA70D Gene

No data available for Paralogs for SNORA70D Gene

Variants for SNORA70D Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA70D Gene

Variant ID Type Subtype PubMed ID
nsv7285 OTHER Inversion 18451855

Relevant External Links for SNORA70D Gene

HapMap Linkage Disequilibrium report
SNORA70D

No data available for Sequence variations from dbSNP and Humsavar for SNORA70D Gene

Disorders for SNORA70D Gene

No disorders were found for SNORA70D Gene.

No data available for UniProtKB/Swiss-Prot for SNORA70D Gene

Publications for SNORA70D Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA70D Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA70D
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA70D
    • Block miRNA regulation of SNORA70D using miScript Target Protectors

    Sources for SNORA70D Gene

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