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Aliases for SNORA70C Gene

Subcategory (RNA class) for SNORA70C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA70C Gene

  • Small Nucleolar RNA, H/ACA Box 70C 2 3
  • Small Nucleolar RNA, H/ACA Box 70C (Retrotransposed) 2 3
  • U70 Type 3 SnoRT 3
  • SNORA70C SnoRNA 3
  • U70C 3

External Ids for SNORA70C Gene

ORGUL Members for SNORA70C Gene

Previous GeneCards Identifiers for SNORA70C Gene

  • GC09U900874
  • GC09M118985
  • GC09M119944
  • GC09M089562

Summaries for SNORA70C Gene

Entrez Gene Summary for SNORA70C Gene

  • This gene produces a small nucleolar RNA (snoRNA) that plays a role in post-transcriptional modification. This snoRNA is a type-3 retrotransposed snoRNA, where the ribosomal protein L10 gene on chromosome X is its parental gene, and this, together with part of the parental gene, was subsequently mobilized into an intron of the astrotactin 2 host gene on chromosome 9. This snoRNA contains a H/ACA box, which serves as a guide for the pseudouridylation of selected bases of ribosomal RNA by forming short duplexes with the 18S rRNA U1692, the target for this snoRNA. This gene is specific to human, chimp and orangutan, and is not found in the genomes of rhesus or marmoset. [provided by RefSeq, Jun 2010]

GeneCards Summary for SNORA70C Gene

SNORA70C (Small Nucleolar RNA, H/ACA Box 70C) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA70C Gene

Genomics for SNORA70C Gene

Regulatory Elements for SNORA70C Gene

Genomic Location for SNORA70C Gene

Start:
117,181,066 bp from pter
End:
117,181,201 bp from pter
Size:
136 bases
Orientation:
Minus strand

Genomic View for SNORA70C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA70C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA70C Gene

Proteins for SNORA70C Gene

Post-translational modifications for SNORA70C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA70C Gene

Domains for SNORA70C Gene

Gene Families for SNORA70C Gene

HGNC:
  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA70C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA70C Gene

Function for SNORA70C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA70C Gene

Localization for SNORA70C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA70C Gene

Pathways for SNORA70C Gene

SuperPathways for SNORA70C Gene

No Data Available

Interacting Proteins for SNORA70C Gene

Gene Ontology (GO) - Biological Process for SNORA70C Gene

None

No data available for Pathways by source for SNORA70C Gene

Transcripts for SNORA70C Gene

mRNA/cDNA for SNORA70C Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA70C Gene

No ASD Table

Relevant External Links for SNORA70C Gene

GeneLoc Exon Structure for
SNORA70C
ECgene alternative splicing isoforms for
SNORA70C

Expression for SNORA70C Gene

SOURCE GeneReport for Unigene cluster for SNORA70C Gene Hs.693445

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORA70C Gene

Orthologs for SNORA70C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA70C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA70 36
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA70 36
  • 66 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23699 36
  • 77 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA70 36
  • 71 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA70 36
  • 65 (a)
ManyToMany
Species with no ortholog for SNORA70C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA70C Gene

ENSEMBL:
Gene Tree for SNORA70C (if available)
TreeFam:
Gene Tree for SNORA70C (if available)

Paralogs for SNORA70C Gene

No data available for Paralogs for SNORA70C Gene

Variants for SNORA70C Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA70C Gene

Variant ID Type Subtype PubMed ID
nsv7434 OTHER Inversion 18451855
nsv528743 CNV Gain 19592680
dgv8276n71 CNV Loss 21882294
nsv893789 CNV Gain 21882294
esv32690 CNV Gain 17666407

Relevant External Links for SNORA70C Gene

HapMap Linkage Disequilibrium report
SNORA70C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORA70C Gene

Disorders for SNORA70C Gene

Relevant External Links for SNORA70C

Genetic Association Database (GAD)
SNORA70C
genes like me logo Genes that share disorders with SNORA70C: view

No data available for UniProtKB/Swiss-Prot for SNORA70C Gene

Publications for SNORA70C Gene

  1. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3
  2. Mammalian small nucleolar RNAs are mobile genetic elements. (PMID: 17154719) Weber M.J. (PLoS Genet. 2006) 3
  3. Genome-wide analyses of retrogenes derived from the human box H/ACA snoRNAs. (PMID: 17175533) Luo Y. … Li S. (Nucleic Acids Res. 2007) 3
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA70C Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA70C
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA70C
    • Block miRNA regulation of SNORA70C using miScript Target Protectors

    Sources for SNORA70C Gene

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