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Aliases for SNORA69 Gene

Subcategory (RNA class) for SNORA69 Gene


Quality Score for this RNA gene is


Aliases for SNORA69 Gene

  • Small Nucleolar RNA, H/ACA Box 69 2 3 5
  • RNA, U69 Small Nucleolar 2
  • U69a Small Nucleolar RNA 3
  • U69 Small Nucleolar RNA 3
  • U69 SnoRNA 3
  • RNU69 3
  • U69A 3
  • U69 3

External Ids for SNORA69 Gene

Previous HGNC Symbols for SNORA69 Gene

  • RNU69

Previous GeneCards Identifiers for SNORA69 Gene

  • GC0XM118805
  • GC0XM118921
  • GC0XM108415

Summaries for SNORA69 Gene

Entrez Gene Summary for SNORA69 Gene

  • This gene encodes a member of the family of box ACA small nucleolar RNAs, characterized by a consensus ACA motif positioned 3 nucleotides from the 3' end of the RNAs and a double-hairpin structure. The box ACA small nucleolar RNAs may play a role in rRNA maturation. This gene is co-transcribed with the ribosomal protein L39 gene. [provided by RefSeq, Oct 2009]

GeneCards Summary for SNORA69 Gene

SNORA69 (Small Nucleolar RNA, H/ACA Box 69) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA69 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA69 Gene

Genomics for SNORA69 Gene

GeneHancer (GH) Regulatory Elements for SNORA69 Gene

Promoters and enhancers for SNORA69 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI119788 Enhancer 0.2 Ensembl 550.8 -0.6 -617 0.2 GC0XM119788 GC0XM119789 SNORA69 RPL39
GH0XI119789 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.8 -3.8 -3780 3.7 PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B SP3 ZHX2 RPL39 NKAP CUL4B UPF3B RNF113A GC0XM119788 GC0XM119789 SNORA69
GH0XI119784 Enhancer 0.7 ENCODE 0.8 +2.4 2411 0.2 HDGF CTCF ZNF280D SMAD5 L3MBTL2 BHLHE40 NR2F1 TRIM22 BACH1 RAD21 GC0XM119788 GC0XM119789 SNORA69 SOWAHD
GH0XI119775 Enhancer 0.7 Ensembl ENCODE 0.4 +11.8 11750 1.2 ZNF687 IKZF1 MLLT1 IKZF2 RUNX3 PRDM1 SPI1 RHOXF1-AS1 GC0XM119788 GC0XM119789 SNORA69 SOWAHD
GH0XI119782 Enhancer 0.3 Ensembl 0.8 +4.8 4783 0.2 POLR2A GC0XM119788 GC0XM119789 SNORA69 SOWAHD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA69 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA69 gene promoter:

Genomic Locations for SNORA69 Gene

Genomic Locations for SNORA69 Gene
132 bases
Minus strand

Genomic View for SNORA69 Gene

Genes around SNORA69 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA69 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA69 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA69 Gene

Proteins for SNORA69 Gene

Post-translational modifications for SNORA69 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA69 Gene

Domains & Families for SNORA69 Gene

Gene Families for SNORA69 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA69: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA69 Gene

Function for SNORA69 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA69 Gene

Localization for SNORA69 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA69 Gene

Pathways & Interactions for SNORA69 Gene

SuperPathways for SNORA69 Gene

No Data Available

Interacting Proteins for SNORA69 Gene

Gene Ontology (GO) - Biological Process for SNORA69 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA69 Gene

Drugs & Compounds for SNORA69 Gene

No Compound Related Data Available

Transcripts for SNORA69 Gene

mRNA/cDNA for SNORA69 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA69 Gene

Small nucleolar RNA, H/ACA box 69:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA69 Gene

No ASD Table

Relevant External Links for SNORA69 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA69 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA69 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA69 Gene:


SOURCE GeneReport for Unigene cluster for SNORA69 Gene:

genes like me logo Genes that share expression patterns with SNORA69: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA69 Gene

Orthologs for SNORA69 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA69 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA69 34
  • 100 (a)
(Mus musculus)
Mammalia Gm22784 34
  • 77 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA69 34
  • 76 (a)
(Gallus gallus)
Aves SNORA69 34
  • 73 (a)
(Anolis carolinensis)
Reptilia SNORA69 34
  • 63 (a)
(Danio rerio)
Actinopterygii SNORA69 34
  • 57 (a)
Species where no ortholog for SNORA69 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA69 Gene

Gene Tree for SNORA69 (if available)
Gene Tree for SNORA69 (if available)

Paralogs for SNORA69 Gene

No data available for Paralogs for SNORA69 Gene

Variants for SNORA69 Gene

Sequence variations from dbSNP and Humsavar for SNORA69 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1001146601 -- 119,787,285(-) C/A downstream_transcript_variant
rs1001440055 -- 119,786,903(-) A/T downstream_transcript_variant
rs1002043160 -- 119,789,349(-) G/A upstream_transcript_variant
rs1003530601 -- 119,788,707(-) C/T upstream_transcript_variant
rs1003667878 -- 119,788,352(-) T/G upstream_transcript_variant

Additional Variant Information for SNORA69 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA69 Gene

Disorders for SNORA69 Gene

Additional Disease Information for SNORA69

No disorders were found for SNORA69 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA69 Gene

Publications for SNORA69 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P … Kiss T (Genes & development 1997) 2 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  5. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. (PMID: 9182768) Ganot P … Kiss T (Cell 1997) 3 58

Products for SNORA69 Gene

Sources for SNORA69 Gene

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