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Aliases for SNORA66 Gene

Subcategory (RNA class) for SNORA66 Gene


Quality Score for this RNA gene is


Aliases for SNORA66 Gene

  • Small Nucleolar RNA, H/ACA Box 66 2 3 5
  • RNA, U66 Small Nucleolar 2 3
  • RNU66 3
  • U66 3

External Ids for SNORA66 Gene

ORGUL Members for SNORA66 Gene

Previous HGNC Symbols for SNORA66 Gene

  • RNU66

Previous GeneCards Identifiers for SNORA66 Gene

  • GC01P093078
  • GC01P093306
  • GC01P091427

Summaries for SNORA66 Gene

Entrez Gene Summary for SNORA66 Gene

  • This gene encodes a non-coding RNA that functions in the biogenesis of other small nuclear RNAs. This RNA is found in the nucleolus, where it may be involved in the pseudouridylation of 18S ribosomal RNA. This RNA is found associated with the GAR1 protein. [provided by RefSeq, Apr 2009]

GeneCards Summary for SNORA66 Gene

SNORA66 (Small Nucleolar RNA, H/ACA Box 66) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA66 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA66 Gene

Genomics for SNORA66 Gene

Regulatory Elements for SNORA66 Gene

Enhancers for SNORA66 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H093177 1.4 ENCODE dbSUPER 70.4 +339.3 339305 4.7 PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 CCDC18-AS1 SNORA66 SNORD21 RPL5 ENSG00000230439 DNTTIP2 GLMN LOC100289500 ENSG00000233482 MTCO3P21
GH01H092831 1.2 ENCODE 76.4 -7.3 -7291 4.2 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC ZFP41 SNORD21 SNORA66 CCDC18-AS1 RPL5 MTF2 ENSG00000230439 DR1 GLMN LOC100289500 ACTBP12
GH01H093773 1.9 FANTOM5 Ensembl ENCODE dbSUPER 23.6 +937.4 937387 9.5 FEZF1 BRCA1 GLIS2 KLF7 FOS SP3 TSHZ1 ZNF662 ZNF623 MAFF ENSG00000230439 SNORA66 BCAR3 SNORD21 LOC100129046 RPL5 DNTTIP2 GCLM TRR-TCT1-1 ARHGAP29
GH01H093078 1.2 ENCODE 35.6 +239.7 239717 4.5 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 CCDC18-AS1 MTF2 SNORD21 SNORA66 TRR-TCT1-1 GLMN DNTTIP2 RPAP2 DR1 RPL5
GH01H092803 1.5 FANTOM5 Ensembl ENCODE 24.4 -35.7 -35662 3.1 HDGF PKNOX1 ATF1 ARNT TCF12 GTF3C2 ZNF121 ZNF766 GATA2 FOS CCDC18-AS1 SNORA66 SNORD21 MTF2 GLMN RPAP2 EVI5 ENSG00000230439 RPL5 DR1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA66 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA66 Gene

Genomic Locations for SNORA66 Gene
133 bases
Plus strand

Genomic View for SNORA66 Gene

Genes around SNORA66 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA66 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA66 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA66 Gene

Proteins for SNORA66 Gene

Post-translational modifications for SNORA66 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA66 Gene

Domains & Families for SNORA66 Gene

Gene Families for SNORA66 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA66: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA66 Gene

Function for SNORA66 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA66 Gene

Localization for SNORA66 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA66 Gene

Pathways & Interactions for SNORA66 Gene

SuperPathways for SNORA66 Gene

No Data Available

Interacting Proteins for SNORA66 Gene

Gene Ontology (GO) - Biological Process for SNORA66 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA66 Gene

Drugs & Compounds for SNORA66 Gene

No Compound Related Data Available

Transcripts for SNORA66 Gene

mRNA/cDNA for SNORA66 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA66 Gene

No ASD Table

Relevant External Links for SNORA66 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA66 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA66 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA66 Gene:

genes like me logo Genes that share expression patterns with SNORA66: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA66 Gene

Orthologs for SNORA66 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA66 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA66 34
  • 100 (a)
(Bos Taurus)
Mammalia SNORA66 34
  • 86 (a)
(Canis familiaris)
Mammalia SNORA66 34
  • 82 (a)
(Mus musculus)
Mammalia Gm26387 34
  • 82 (a)
(Monodelphis domestica)
Mammalia SNORA66 34
  • 76 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA66 34
  • 70 (a)
(Gallus gallus)
Aves SNORA66 34
  • 52 (a)
(Anolis carolinensis)
Reptilia SNORA66 34
  • 72 (a)
Species where no ortholog for SNORA66 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA66 Gene

Gene Tree for SNORA66 (if available)
Gene Tree for SNORA66 (if available)

Paralogs for SNORA66 Gene

No data available for Paralogs for SNORA66 Gene

Variants for SNORA66 Gene

Sequence variations from dbSNP and Humsavar for SNORA66 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs773839391 Uncertain significance 92,840,626(+) AAGAA(C/G)TTAAA intron-variant, upstream-variant-2KB, reference, missense
rs10874744 Benign 92,840,760(+) GAAGC(A/G)AAGGG intron-variant, nc-transcript-variant
rs1000305053 -- 92,841,100(+) TATTC(C/T)ATATT intron-variant, downstream-variant-500B
rs1002840787 -- 92,840,203(+) GACAG(G/T)TCTCA intron-variant, upstream-variant-2KB
rs1003533956 -- 92,838,774(+) ATCAA(A/G)TGGAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA66 Gene

Variant ID Type Subtype PubMed ID
nsv508393 CNV deletion 20534489
nsv1008602 CNV gain 25217958
esv2714684 CNV deletion 23290073

Relevant External Links for SNORA66 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA66 Gene

Disorders for SNORA66 Gene

Relevant External Links for SNORA66

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORA66 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA66 Gene

Publications for SNORA66 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 60
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 60
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 60
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORA66 Gene

Sources for SNORA66 Gene

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