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Aliases for SNORA65 Gene

Subcategory (RNA class) for SNORA65 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA65 Gene

  • Small Nucleolar RNA, H/ACA Box 65 2 3 5
  • RNA, U65 Small Nucleolar 2 3
  • U65 Small Nucleolar RNA 3
  • U65 SnoRNA 3
  • RNU65 3
  • U65 3

External Ids for SNORA65 Gene

ORGUL Members for SNORA65 Gene

Previous HGNC Symbols for SNORA65 Gene

  • RNU65

Previous GeneCards Identifiers for SNORA65 Gene

  • GC09M129251
  • GC09M130210
  • GC09M099826

Summaries for SNORA65 Gene

GeneCards Summary for SNORA65 Gene

SNORA65 (Small Nucleolar RNA, H/ACA Box 65) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA65 Gene

Genomics for SNORA65 Gene

Regulatory Elements for SNORA65 Gene

Enhancers for SNORA65 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G127533 1.9 FANTOM5 Ensembl ENCODE dbSUPER 23.6 -91.8 -91813 13.7 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A ZBTB7B ZNF766 ZNF143 FOS RPL12 URM1 SNORA65 ENSG00000272593 ZNF79 ENSG00000272696 ODF2-AS1 NAIF1 SLC2A8 LOC102723566
GH09G127946 1.4 ENCODE dbSUPER 21.2 -500.4 -500373 5.2 FOXA2 MLX CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 PIP5KL1 ZNF79 SNORA65 NAIF1 COQ4 WDR34 DPM2 GC09P127942 FAM102A
GH09G127516 1.9 FANTOM5 Ensembl ENCODE dbSUPER 13.9 -72.9 -72870 9.3 PKNOX1 ARNT SIN3A FEZF1 ZNF2 GTF3C2 ZNF766 GATA2 CBX5 ZNF143 RPL12 SLC2A8 ZNF79 SNORA65 NAIF1 URM1 FAM129B CDK9 TOR2A SH2D3C
GH09G126718 2 FANTOM5 Ensembl ENCODE dbSUPER 12.8 +727.0 727045 5.8 HDGF PKNOX1 CREB3L1 AGO1 ARID4B FEZF1 ZNF2 ZBTB7B YY1 FOS ZNF79 SNORA65 ZBTB43 MVB12B ZBTB34 PIR57638
GH09G127448 1.2 ENCODE 20.1 -0.9 -894 7.5 MLX CREB3L1 AGO1 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SP3 NFYC RPL12 SNORA65 SLC2A8 NAIF1 LOC102723566 ZNF79 ANGPTL2 URM1 FAM129B GC09M127449
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA65 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA65 Gene

Chromosome:
9
Start:
127,448,501 bp from pter
End:
127,448,637 bp from pter
Size:
137 bases
Orientation:
Minus strand

Genomic View for SNORA65 Gene

Genes around SNORA65 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA65 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA65 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA65 Gene

Proteins for SNORA65 Gene

Post-translational modifications for SNORA65 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA65 Gene

Domains & Families for SNORA65 Gene

Gene Families for SNORA65 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA65: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA65 Gene

Function for SNORA65 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA65 Gene

Localization for SNORA65 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA65 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNORA65 Gene

Pathways & Interactions for SNORA65 Gene

SuperPathways for SNORA65 Gene

No Data Available

Interacting Proteins for SNORA65 Gene

Gene Ontology (GO) - Biological Process for SNORA65 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA65 Gene

Drugs & Compounds for SNORA65 Gene

No Compound Related Data Available

Transcripts for SNORA65 Gene

mRNA/cDNA for SNORA65 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA65 Gene

No ASD Table

Relevant External Links for SNORA65 Gene

GeneLoc Exon Structure for
SNORA65
ECgene alternative splicing isoforms for
SNORA65

Expression for SNORA65 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA65 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA65 Gene:

SNORA65
genes like me logo Genes that share expression patterns with SNORA65: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA65 Gene

Orthologs for SNORA65 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA65 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia SNORA65 35 35
  • 98 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORA65 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA65 35 35 35 35
  • 95 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24613 35
  • 92 (a)
OneToMany
Snora65 35
  • 92 (a)
OneToMany
Gm26440 35
  • 91 (a)
OneToMany
Gm22807 35
  • 88 (a)
OneToMany
Gm26075 35
  • 80 (a)
OneToMany
Gm25379 35
  • 70 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA65 35
  • 88 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA65 35 35 35
  • 82 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA65 35
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA65 35
  • 71 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA65 35
  • 60 (a)
OneToOne
Species where no ortholog for SNORA65 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA65 Gene

ENSEMBL:
Gene Tree for SNORA65 (if available)
TreeFam:
Gene Tree for SNORA65 (if available)

Paralogs for SNORA65 Gene

No data available for Paralogs for SNORA65 Gene

Variants for SNORA65 Gene

Sequence variations from dbSNP and Humsavar for SNORA65 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000228584 -- 127,450,305(+) TGAGA(C/G)ACAGC intron-variant, upstream-variant-2KB
rs1000811215 -- 127,448,746(+) TATGT(A/G)GTCTC intron-variant, upstream-variant-2KB
rs1001119093 -- 127,448,517(+) TGCTT(C/T)CGGCA intron-variant, nc-transcript-variant
rs1002742128 -- 127,450,494(+) CACCC(C/T)TCAGG intron-variant, upstream-variant-2KB
rs1006740683 -- 127,448,998(+) ATTTT(C/G)TATTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA65 Gene

Variant ID Type Subtype PubMed ID
nsv972452 CNV duplication 23825009

Relevant External Links for SNORA65 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA65

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA65 Gene

Disorders for SNORA65 Gene

Relevant External Links for SNORA65

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA65

No disorders were found for SNORA65 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA65 Gene

Publications for SNORA65 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P. … Kiss T. (Genes Dev. 1997) 2 3 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA65 Gene

Sources for SNORA65 Gene

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