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Aliases for SNORA65 Gene

Subcategory (RNA class) for SNORA65 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA65 Gene

  • Small Nucleolar RNA, H/ACA Box 65 2 3 5
  • RNA, U65 Small Nucleolar 2 3
  • U65 Small Nucleolar RNA 3
  • U65 SnoRNA 3
  • RNU65 3
  • U65 3

External Ids for SNORA65 Gene

ORGUL Members for SNORA65 Gene

Previous HGNC Symbols for SNORA65 Gene

  • RNU65

Previous GeneCards Identifiers for SNORA65 Gene

  • GC09M129251
  • GC09M130210
  • GC09M099826

Summaries for SNORA65 Gene

GeneCards Summary for SNORA65 Gene

SNORA65 (Small Nucleolar RNA, H/ACA Box 65) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA65 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA65 Gene

Genomics for SNORA65 Gene

GeneHancer (GH) Regulatory Elements for SNORA65 Gene

Promoters and enhancers for SNORA65 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I127446 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 592.5 -0.9 -893 7.5 CLOCK MLX DMAP1 IRF4 YY1 ZNF213 ZNF143 ZNF548 SP3 NFYC RPL12 SNORA65 GC09M127449 LRSAM1 ZNF79 ENSG00000272593 NAIF1 LOC102723566 FPGS URM1
GH09I128321 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 37.7 -874.3 -874251 3.3 HDGF PKNOX1 CLOCK SMAD1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 COQ4 TRUB2 URM1 SNORA65 LOC102723566 NUP188 ZNF79 GOLGA2 FPGS PKN3
GH09I127914 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 28 -469.9 -469863 7.5 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B NEUROD1 SIN3A ZNF2 YY1 ST6GALNAC4 SNORA65 ZNF79 PIP5KL1 NAIF1 GLE1 ODF2 FPGS LOC102723566 RPL12
GH09I128190 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 33.1 -743.5 -743518 3.7 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF207 CIZ1 DNM1 SNORA65 NUP188 GOLGA2 URM1 ZNF79 NAIF1 GLE1 SPOUT1
GH09I128339 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 28 -892.0 -892022 2.1 HDGF HNRNPUL1 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B SLC27A4 TRR-TCT3-1 TMSB4XP4 ZNF79 NUP188 NAIF1 SNORA65 GLE1 CIZ1 RPL12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA65 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA65 gene promoter:

Genomic Locations for SNORA65 Gene

Genomic Locations for SNORA65 Gene
chr9:127,448,501-127,448,637
(GRCh38/hg38)
Size:
137 bases
Orientation:
Minus strand
chr9:130,210,780-130,210,916
(GRCh37/hg19)

Genomic View for SNORA65 Gene

Genes around SNORA65 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA65 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA65 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA65 Gene

Proteins for SNORA65 Gene

Post-translational modifications for SNORA65 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA65 Gene

Domains & Families for SNORA65 Gene

Gene Families for SNORA65 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA65: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA65 Gene

Function for SNORA65 Gene

Phenotypes From GWAS Catalog for SNORA65 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA65 Gene

Localization for SNORA65 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA65 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA65 Gene

Pathways & Interactions for SNORA65 Gene

SuperPathways for SNORA65 Gene

No Data Available

Interacting Proteins for SNORA65 Gene

Gene Ontology (GO) - Biological Process for SNORA65 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA65 Gene

Drugs & Compounds for SNORA65 Gene

No Compound Related Data Available

Transcripts for SNORA65 Gene

mRNA/cDNA for SNORA65 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA65 Gene

No ASD Table

Relevant External Links for SNORA65 Gene

GeneLoc Exon Structure for
SNORA65
ECgene alternative splicing isoforms for
SNORA65

Expression for SNORA65 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA65 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA65 Gene:

SNORA65
genes like me logo Genes that share expression patterns with SNORA65: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA65 Gene

Orthologs for SNORA65 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA65 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia SNORA65 34 34
  • 98 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORA65 34
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA65 34 34 34 34
  • 95 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24613 34
  • 92 (a)
OneToMany
Snora65 34
  • 92 (a)
OneToMany
Gm26440 34
  • 91 (a)
OneToMany
Gm22807 34
  • 88 (a)
OneToMany
Gm26075 34
  • 80 (a)
OneToMany
Gm25379 34
  • 70 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA65 34
  • 88 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA65 34 34 34
  • 82 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA65 34
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA65 34
  • 71 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA65 34
  • 60 (a)
OneToOne
Species where no ortholog for SNORA65 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA65 Gene

ENSEMBL:
Gene Tree for SNORA65 (if available)
TreeFam:
Gene Tree for SNORA65 (if available)

Paralogs for SNORA65 Gene

No data available for Paralogs for SNORA65 Gene

Variants for SNORA65 Gene

Sequence variations from dbSNP and Humsavar for SNORA65 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000228584 -- 127,450,305(-) C/G upstream_transcript_variant
rs1000811215 -- 127,448,746(-) G/A upstream_transcript_variant
rs1001119093 -- 127,448,517(-) T/C non_coding_transcript_variant
rs1002742128 -- 127,450,494(-) C/T upstream_transcript_variant
rs1006740683 -- 127,448,998(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA65 Gene

Variant ID Type Subtype PubMed ID
nsv972452 CNV duplication 23825009

Additional Variant Information for SNORA65 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA65

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA65 Gene

Disorders for SNORA65 Gene

Additional Disease Information for SNORA65

No disorders were found for SNORA65 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA65 Gene

Publications for SNORA65 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P … Kiss T (Genes & development 1997) 2 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA65 Gene

Sources for SNORA65 Gene

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