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Aliases for SNORA63 Gene

Subcategory (RNA class) for SNORA63 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA63 Gene

  • Small Nucleolar RNA, H/ACA Box 63 2 3 5
  • RNA, U107 Small Nucleolar 2 3
  • RNA, Small Nucleolar E3 3
  • SNORA63A 3
  • ElF-4AII 3
  • RNU107 3
  • E3-2 3
  • RNE3 3
  • E3 3

External Ids for SNORA63 Gene

Previous HGNC Symbols for SNORA63 Gene

  • RNE3
  • RNU107

Previous GeneCards Identifiers for SNORA63 Gene

  • GC03P187995
  • GC03P187998
  • GC03P186500
  • GC03P186521
  • GC03P186527
  • GC03P186532
  • GC03P186538
  • GC03P186547
  • GC03P186555
  • GC03P186573
  • GC03P186790
  • GC03P186796
  • GC03P186801
  • GC03P186806

Summaries for SNORA63 Gene

GeneCards Summary for SNORA63 Gene

SNORA63 (Small Nucleolar RNA, H/ACA Box 63) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA63 Gene

Genomics for SNORA63 Gene

Regulatory Elements for SNORA63 Gene

Enhancers for SNORA63 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F187129 1.4 FANTOM5 Ensembl ENCODE 21.2 +343.3 343282 2.4 CTCF IRF2 PKNOX1 JUN RAD21 CBX5 ZNF26 ZNF143 FOS TRIM24 SNORA81 ENSG00000200418 SNORA63 SNORA4 TBCCD1 RPL39L EIF4A2 ADIPOQ RFC4 MIR1248
GH03F187038 1.3 Ensembl ENCODE 10.5 +254.4 254367 7.3 PKNOX1 MLX ARID4B DMAP1 YY1 SLC30A9 CBX5 ZNF143 FOS PAF1 ADIPOQ RFC4 SNORA63 SNORA81 EIF4A2 ENSG00000200418 MIR1248 ADIPOQ-AS1 ST6GAL1 PIR46786
GH03F186752 1.2 Ensembl ENCODE 10.9 -33.2 -33162 3.9 ARID4B BRCA1 YY1 ZNF121 FOS REST KAT8 MAFF SMARCA4 STAT3 KNG1 MIR1248 EIF4A2 ENSG00000200418 SNORA63 SNORA81 RFC4 FETUB ENSG00000231724 AHSG
GH03F186588 1.2 Ensembl ENCODE 10.7 -197.4 -197386 3.2 BRCA1 RAD21 CHAMP1 RARA GTF3C2 SLC30A9 ZNF366 SCRT2 RCOR1 FOS ENSG00000200418 TBCCD1 AHSG EIF4A2 MIR1248 SNORD2 SNORA63 SNORA81 SNORA4 ENSG00000231724
GH03F186540 1.2 Ensembl ENCODE 9.9 -246.3 -246316 1.7 RAD21 YY1 RFX5 ZNF366 SCRT2 ZNF207 FOS DEK MIXL1 ELK4 TRA2B ENSG00000200418 SNORA63 SNORA81 EIF4A2 MIR1248 RFC4 CRYGS LINC02052
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA63 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA63 Gene

Chromosome:
3
Start:
186,787,299 bp from pter
End:
186,787,433 bp from pter
Size:
135 bases
Orientation:
Plus strand

Genomic View for SNORA63 Gene

Genes around SNORA63 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA63 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA63 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA63 Gene

Proteins for SNORA63 Gene

Post-translational modifications for SNORA63 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA63 Gene

Domains & Families for SNORA63 Gene

Gene Families for SNORA63 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA63: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA63 Gene

Function for SNORA63 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA63 Gene

Localization for SNORA63 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA63 Gene

Pathways & Interactions for SNORA63 Gene

SuperPathways for SNORA63 Gene

No Data Available

Interacting Proteins for SNORA63 Gene

Gene Ontology (GO) - Biological Process for SNORA63 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA63 Gene

Transcripts for SNORA63 Gene

mRNA/cDNA for SNORA63 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA63 Gene

No ASD Table

Relevant External Links for SNORA63 Gene

GeneLoc Exon Structure for
SNORA63
ECgene alternative splicing isoforms for
SNORA63

Expression for SNORA63 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA63 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA63 Gene:

SNORA63
genes like me logo Genes that share expression patterns with SNORA63: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA63 Gene

Orthologs for SNORA63 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA63 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA63 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA63 35
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA63 35
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26447 35
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA63 35 35 35
  • 65 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA63 35
  • 58 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA63 35
  • 77 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA63 35
  • 75 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA63 35 35 35 35 35
  • 69 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORA63 35
  • 57 (a)
OneToMany
Species where no ortholog for SNORA63 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA63 Gene

ENSEMBL:
Gene Tree for SNORA63 (if available)
TreeFam:
Gene Tree for SNORA63 (if available)

Paralogs for SNORA63 Gene

No data available for Paralogs for SNORA63 Gene

Variants for SNORA63 Gene

Sequence variations from dbSNP and Humsavar for SNORA63 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111446641 -- 186,786,424(+) AAGAC(-/AG)AGACG intron-variant, upstream-variant-2KB
rs111802039 -- 186,787,112(+) TTAAC(C/T)TCTAA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs112227828 -- 186,786,968(+) CTTTC(-/T)TTGAA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs112754953 -- 186,786,052(+) CCTTT(C/G)TAAGT upstream-variant-2KB, splice-donor-variant
rs112852782 -- 186,786,427(+) ACAGA(-/GA)CGCTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA63 Gene

Variant ID Type Subtype PubMed ID
nsv1012615 CNV gain 25217958
esv3893839 CNV gain 25118596
esv34136 CNV loss 18971310
esv2759206 CNV loss 17122850
dgv5005n100 CNV gain 25217958

Relevant External Links for SNORA63 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA63

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA63 Gene

Disorders for SNORA63 Gene

Relevant External Links for SNORA63

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA63

No disorders were found for SNORA63 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA63 Gene

Publications for SNORA63 Gene

  1. Three small nucleolar RNAs of unique nucleotide sequences. (PMID: 8421699) Ruff E.A. … Eliceiri G.L. (Proc. Natl. Acad. Sci. U.S.A. 1993) 2 3 64
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 3 64
  5. Three small nucleolar RNAs that are involved in ribosomal RNA precursor processing. (PMID: 9144174) Mishra R.K. … Eliceiri G.L. (Proc. Natl. Acad. Sci. U.S.A. 1997) 3 64

Products for SNORA63 Gene

Sources for SNORA63 Gene

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