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Aliases for SNORA62 Gene

Subcategory (RNA class) for SNORA62 Gene

snoRNA

Quality Score for this RNA gene is

12

Aliases for SNORA62 Gene

  • Small Nucleolar RNA, H/ACA Box 62 2 3 5
  • RNA, U108 Small Nucleolar 2 3
  • RNA, Small Nucleolar E2 3
  • RNU108 3
  • E2-1 3
  • RNE2 3
  • E2 3

External Ids for SNORA62 Gene

Previous HGNC Symbols for SNORA62 Gene

  • RNE2
  • RNU108

Previous GeneCards Identifiers for SNORA62 Gene

  • GC03P039430
  • GC03P039432
  • GC03P039450
  • GC03P039454
  • GC03P039458
  • GC03P039460
  • GC03P039466
  • GC03P039479
  • GC03P039437
  • GC03P039441
  • GC03P039447
  • GC03P039465
  • GC03P039472
  • GC03P039477

Summaries for SNORA62 Gene

GeneCards Summary for SNORA62 Gene

SNORA62 (Small Nucleolar RNA, H/ACA Box 62) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORA62 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA62/SNORA6 family: The members of this family belong to the H/ACA class of snoRNAs which are predicted to guide the sites of modification of uridines to pseudouridines [3]. This family includes human snoRNAs E2 (SNORA62), ACA6 (SNORA6) and M2 and mouse MBI-136. In humans both E2 and ACA6 are encoded in the introns on the same host gene (LAMR1)[1,3]. E2 is involved in the processing of eukaryotic pre-rRNA and has regions of complementarity to 28S rRNA [2]. ACA6 is predicted to guide the pseudouridylation of residue U3616 of 28S rRNA [5].

View fRNAdb secondary structures for SNORA62

Additional gene information for SNORA62 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA62 Gene

Genomics for SNORA62 Gene

Regulatory Elements for SNORA62 Gene

Enhancers for SNORA62 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H039145 2.1 FANTOM5 Ensembl ENCODE dbSUPER 38.3 -260.0 -259958 10 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF766 ZNF207 GORASP1 SNORA62 TTC21A CX3CR1 OXSR1 WDR48 CSRNP1 XIRP1 MOBP ACVR2B-AS1
GH03H039382 1.4 ENCODE dbSUPER 27.1 -27.3 -27272 2 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 FOS GORASP1 RPSA SNORA62 WDR48 XIRP1 SLC25A38 GC03M039393
GH03H040308 1.1 ENCODE 22.4 +899.1 899084 2 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 YY1 ZNF766 CBX5 ZNF207 SNORA62 ENTPD3-AS1 ZNF619 RPL14 EIF1B-AS1 PGAM1P3
GH03H038722 1.5 VISTA ENCODE 13.1 -686.5 -686528 4 PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 FOS ATF7 NCOA1 GORASP1 SNORA62 ENSG00000231243 RNU6-1227P OXSR1 SCN10A SCN5A
GH03H039124 1.4 Ensembl ENCODE dbSUPER 11.3 -284.6 -284590 3 HDGF ARNT ZSCAN4 RAD21 ZNF143 FOS RUNX3 ZHX1 EGR2 SMARCA5 TTC21A CSRNP1 GORASP1 OXSR1 SNORA62 XIRP1 CX3CR1 MIR6822
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA62 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA62 Gene

Chromosome:
3
Start:
39,411,054 bp from pter
End:
39,411,207 bp from pter
Size:
154 bases
Orientation:
Plus strand

Genomic View for SNORA62 Gene

Genes around SNORA62 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA62 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA62 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA62 Gene

ORGUL Member Location for SNORA62 Gene

ORGUL Member Location for SNORA62 gene

Proteins for SNORA62 Gene

Post-translational modifications for SNORA62 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA62 Gene

Domains & Families for SNORA62 Gene

Gene Families for SNORA62 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA62: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA62 Gene

Function for SNORA62 Gene

Phenotypes From GWAS Catalog for SNORA62 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA62
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA62 Gene

Localization for SNORA62 Gene

Gene Ontology (GO) - Cellular Components for SNORA62 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0072588 box H/ACA RNP complex IDA 10757788
genes like me logo Genes that share ontologies with SNORA62: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA62 Gene

Pathways & Interactions for SNORA62 Gene

SuperPathways for SNORA62 Gene

No Data Available

Interacting Proteins for SNORA62 Gene

Gene Ontology (GO) - Biological Process for SNORA62 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA62 Gene

Drugs & Compounds for SNORA62 Gene

No Compound Related Data Available

Transcripts for SNORA62 Gene

fRNAdb Secondary structures for SNORA62 Gene

  • FR143100

mRNA/cDNA for SNORA62 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA62
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA62 Gene

No ASD Table

Relevant External Links for SNORA62 Gene

GeneLoc Exon Structure for
SNORA62
ECgene alternative splicing isoforms for
SNORA62

Expression for SNORA62 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA62 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for SNORA62 Gene



NURSA nuclear receptor signaling pathways regulating expression of SNORA62 Gene:

SNORA62
genes like me logo Genes that share expression patterns with SNORA62: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA62 Gene

Orthologs for SNORA62 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA62 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA62 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA62 34
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA62 34
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snora62 34
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA62 34
  • 84 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA62 34
  • 70 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA62 34
  • 71 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA62 34
  • 74 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA62 34
  • 52 (a)
OneToMany
Species where no ortholog for SNORA62 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA62 Gene

ENSEMBL:
Gene Tree for SNORA62 (if available)
TreeFam:
Gene Tree for SNORA62 (if available)

Paralogs for SNORA62 Gene

No data available for Paralogs for SNORA62 Gene

Variants for SNORA62 Gene

Sequence variations from dbSNP and Humsavar for SNORA62 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs397514760 Pathogenic 39,411,688(+) TGGCT(C/G/T)GGGAA downstream-variant-500B, reference, missense
rs397514761 Pathogenic 39,411,706(+) GCATG(C/T)GTGGC downstream-variant-500B, reference, missense
rs1000971865 -- 39,409,723(+) CCCGT(A/T)AATTG intron-variant, upstream-variant-2KB
rs1001148912 -- 39,409,257(+) ACTGC(A/T)GTGGT intron-variant, upstream-variant-2KB
rs1006095735 -- 39,410,483(+) CAGTT(C/G)TTGCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA62 Gene

Variant ID Type Subtype PubMed ID
nsv963310 CNV duplication 23825009

Relevant External Links for SNORA62 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA62

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA62 Gene

Disorders for SNORA62 Gene

Relevant External Links for SNORA62

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA62

No disorders were found for SNORA62 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA62 Gene

Publications for SNORA62 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1 2 3 60
  2. Three small nucleolar RNAs of unique nucleotide sequences. (PMID: 8421699) Ruff EA … Eliceiri GL (Proceedings of the National Academy of Sciences of the United States of America 1993) 1 2 3 60
  3. Genes for E1, E2, and E3 small nucleolar RNAs. (PMID: 8415643) Nag MK … Eliceiri GL (Proceedings of the National Academy of Sciences of the United States of America 1993) 2 3 60
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60
  5. In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs. (PMID: 10757788) Dragon F … Filipowicz W (Molecular and cellular biology 2000) 3 60

Products for SNORA62 Gene

Sources for SNORA62 Gene

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