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Aliases for SNORA61 Gene

Subcategory (RNA class) for SNORA61 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA61 Gene

  • Small Nucleolar RNA, H/ACA Box 61 2 3 5
  • ACA61 SnoRNA 3
  • ACA61 3

External Ids for SNORA61 Gene

Previous GeneCards Identifiers for SNORA61 Gene

  • GC01M028778
  • GC01M028907
  • GC01M028910
  • GC01M028917
  • GC01M028581
  • GC01M028586
  • GC01M028590
  • GC01M028593
  • GC01M028597

Summaries for SNORA61 Gene

GeneCards Summary for SNORA61 Gene

SNORA61 (Small Nucleolar RNA, H/ACA Box 61) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA61 Gene

Genomics for SNORA61 Gene

Regulatory Elements for SNORA61 Gene

Enhancers for SNORA61 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G028551 1.2 ENCODE 12.8 +26.7 26723 2.5 CREB3L1 YBX1 DMAP1 YY1 SLC30A9 ZNF143 SP3 TBX21 MEF2D ZNF610 PRDX3P2 SNORA61 SNORD99 SNORA73B RCC1 SNHG3 PHACTR4 RAB42 DNAJC8 TRNAU1AP
GH01G028601 1.2 Ensembl ENCODE 11.9 -22.1 -22104 1.4 ATF1 SIN3A FEZF1 TCF12 ZNF766 ELK1 FOS JUNB TBX21 ZNF518A PHACTR4 SNORD99 SNORA61 TRNAU1AP PRDX3P2 SNORA73B SNHG3 RCC1 GMEB1 RAB42
GH01G028416 1.3 Ensembl ENCODE 10.6 +162.5 162527 2.4 PKNOX1 ATF1 ARNT FEZF1 ZNF2 TCF12 ZNF766 GATA2 ELK1 FOS PHACTR4 SNORD99 SNORA61 ENSG00000206779
GH01G028602 0.9 ENCODE 11.9 -23.1 -23068 0.3 HDGF ATF1 ARNT ARID4B ZBTB40 ZNF2 RAD21 RELB IKZF2 DEK SNORD99 SNORA61 PRDX3P2 SNORA73B RCC1 SNHG3 GMEB1 PHACTR4 RAB42 TAF12
GH01G028471 0.8 ENCODE 11.1 +108.2 108232 0.5 HDGF CTCF ESRRA GTF2E2 JUN BACH1 RAD21 ZNF316 NCOR1 FOXK2 PHACTR4 TRNAU1AP SNHG3 RCC1 SNORA73B PRDX3P2 SNORA61 SNORD99 RNU6ATAC27P ENSG00000229820
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA61 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA61 Gene

Chromosome:
1
Start:
28,579,764 bp from pter
End:
28,579,893 bp from pter
Size:
130 bases
Orientation:
Minus strand

Genomic View for SNORA61 Gene

Genes around SNORA61 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA61 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA61 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA61 Gene

Proteins for SNORA61 Gene

Post-translational modifications for SNORA61 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA61 Gene

Domains & Families for SNORA61 Gene

Gene Families for SNORA61 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA61: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA61 Gene

Function for SNORA61 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA61 Gene

Localization for SNORA61 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA61 Gene

Pathways & Interactions for SNORA61 Gene

SuperPathways for SNORA61 Gene

No Data Available

Interacting Proteins for SNORA61 Gene

Gene Ontology (GO) - Biological Process for SNORA61 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA61 Gene

Transcripts for SNORA61 Gene

mRNA/cDNA for SNORA61 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA61 Gene

No ASD Table

Relevant External Links for SNORA61 Gene

GeneLoc Exon Structure for
SNORA61
ECgene alternative splicing isoforms for
SNORA61

Expression for SNORA61 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA61 Gene:

SNORA61
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA61 Gene

Orthologs for SNORA61 Gene

Evolution for SNORA61 Gene

ENSEMBL:
Gene Tree for SNORA61 (if available)
TreeFam:
Gene Tree for SNORA61 (if available)

No data available for Orthologs for SNORA61 Gene

Paralogs for SNORA61 Gene

No data available for Paralogs for SNORA61 Gene

Variants for SNORA61 Gene

Sequence variations from dbSNP and Humsavar for SNORA61 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000018185 -- 28,580,922(+) TGGAA(A/C)TGTAT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000600385 -- 28,579,545(+) CATAG(A/G)TCCAT nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs1001430380 -- 28,579,825(+) TCACT(A/G)TTACT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1002736529 -- 28,580,757(+) CCTTA(A/C)GCTAT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1003537312 -- 28,581,337(+) GAATG(C/T)CTAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA61 Gene

Variant ID Type Subtype PubMed ID
esv2671121 CNV deletion 23128226
nsv545916 CNV gain 21841781

Relevant External Links for SNORA61 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA61

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA61 Gene

Disorders for SNORA61 Gene

Relevant External Links for SNORA61

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA61

No disorders were found for SNORA61 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA61 Gene

Publications for SNORA61 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA61 Gene

Sources for SNORA61 Gene

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