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Aliases for SNORA60 Gene

Subcategory (RNA class) for SNORA60 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA60 Gene

  • Small Nucleolar RNA, H/ACA Box 60 2 3 5
  • ACA60 SnoRNA 3
  • ACA60 3

External Ids for SNORA60 Gene

Previous GeneCards Identifiers for SNORA60 Gene

  • GC20P036516
  • GC20P036519
  • GC20P036522
  • GC20P036525
  • GC20P036528
  • GC20P037078
  • GC20P033813

Summaries for SNORA60 Gene

GeneCards Summary for SNORA60 Gene

SNORA60 (Small Nucleolar RNA, H/ACA Box 60) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA60 Gene

Genomics for SNORA60 Gene

Regulatory Elements for SNORA60 Gene

Enhancers for SNORA60 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F038471 0.8 ENCODE 12.1 +23.3 23278 2.5 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF263 SP3 ENSG00000224635 SNORA60 SNHG11 ENSG00000201811 SNHG17 SNORA71D SNORA71C SNORA71A SNORA71B ARHGAP40
GH20F038519 0.6 VISTA 10.8 +71.1 71058 1.4 CEBPB SNHG11 SNORA60 ENSG00000201811 SNHG17 SNORA71D SNORA71C MIR548O2 RPS3P2
GH20F038356 0.7 ENCODE 10.4 -92.9 -92868 0.2 HDGF CBX3 ARNT ZNF2 RAD21 CHAMP1 ZNF143 KLF7 ZNF391 EGR2 SNHG17 RN7SKP173 SNORA71C LOC105372612 ENSG00000224635 SNORA71B SNORA71A ACTR5 SNORA60 BPI
GH20F038925 0.6 ENCODE 10.3 +478.7 478706 4.8 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 FAM83D SNHG17 ACTR5 SNORA60 SNORA71A DHX35 GC20M038952
GH20F038960 0.2 ENCODE 10.3 +512.8 512763 2.5 PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF207 FAM83D DHX35 SNORA60 ENSG00000261431
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA60 on UCSC Golden Path with GeneCards custom track

Promoters for SNORA60 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001837288 -1469 201 PKNOX1 MXD3 NBN MLLT1 ELF1 MNT HBP1

Genomic Location for SNORA60 Gene

Chromosome:
20
Start:
38,449,369 bp from pter
End:
38,449,504 bp from pter
Size:
136 bases
Orientation:
Plus strand

Genomic View for SNORA60 Gene

Genes around SNORA60 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA60 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA60 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA60 Gene

Proteins for SNORA60 Gene

Post-translational modifications for SNORA60 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA60 Gene

Domains & Families for SNORA60 Gene

Gene Families for SNORA60 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA60: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA60 Gene

Function for SNORA60 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA60 Gene

Localization for SNORA60 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA60 Gene

Pathways & Interactions for SNORA60 Gene

SuperPathways for SNORA60 Gene

No Data Available

Interacting Proteins for SNORA60 Gene

Gene Ontology (GO) - Biological Process for SNORA60 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA60 Gene

Transcripts for SNORA60 Gene

mRNA/cDNA for SNORA60 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA60 Gene

Small nucleolar RNA, H/ACA box 60:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA60 Gene

No ASD Table

Relevant External Links for SNORA60 Gene

GeneLoc Exon Structure for
SNORA60
ECgene alternative splicing isoforms for
SNORA60

Expression for SNORA60 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA60 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA60 Gene:

SNORA60

SOURCE GeneReport for Unigene cluster for SNORA60 Gene:

Hs.706159
genes like me logo Genes that share expression patterns with SNORA60: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA60 Gene

Orthologs for SNORA60 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA60 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA71 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA71 35
  • 89 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA71 35
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25129 35
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA71 35
  • 75 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 35
  • 75 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA71 35
  • 70 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA71 35
  • 71 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA71 35 35
  • 66 (a)
ManyToMany
Species where no ortholog for SNORA60 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA60 Gene

ENSEMBL:
Gene Tree for SNORA60 (if available)
TreeFam:
Gene Tree for SNORA60 (if available)

Paralogs for SNORA60 Gene

No data available for Paralogs for SNORA60 Gene

Variants for SNORA60 Gene

Sequence variations from dbSNP and Humsavar for SNORA60 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1002154 -- 38,448,977(-) AGAAA(A/G)GGCAG intron-variant, upstream-variant-2KB
rs111823403 -- 38,448,489(+) CATCC(A/G)CTGTC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs112136513 -- 38,447,923(+) AAGCC(-/T)TTTTT intron-variant, upstream-variant-2KB
rs113829705 -- 38,449,163(+) CCATA(C/T)GATTC intron-variant, upstream-variant-2KB
rs114513976 -- 38,448,058(+) CTGTT(C/G)CTGGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA60 Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Relevant External Links for SNORA60 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA60

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA60 Gene

Disorders for SNORA60 Gene

Relevant External Links for SNORA60

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA60

No disorders were found for SNORA60 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA60 Gene

Publications for SNORA60 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SNORA60 Gene

Sources for SNORA60 Gene

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