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Aliases for SNORA6 Gene

Subcategory (RNA class) for SNORA6 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA6 Gene

  • Small Nucleolar RNA, H/ACA Box 6 2 3 5
  • ACA6 Small Nucleolar RNA 3
  • Small Nucleolar RNA M2 3
  • ACA6 SnoRNA 3
  • ACA6 3

External Ids for SNORA6 Gene

Previous GeneCards Identifiers for SNORA6 Gene

  • GC03P039429
  • GC03P039431
  • GC03P039449
  • GC03P039434
  • GC03P039438
  • GC03P039444
  • GC03P039451
  • GC03P039468
  • GC03P039473

Summaries for SNORA6 Gene

GeneCards Summary for SNORA6 Gene

SNORA6 (Small Nucleolar RNA, H/ACA Box 6) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA6 Gene

Genomics for SNORA6 Gene

Regulatory Elements for SNORA6 Gene

Enhancers for SNORA6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H039361 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -46.4 -46383 1 MAX BATF RELA ZNF316 GATA3 POLR2A EGR1 EED NR2F6 ETV6 RPSA HNRNPA1P21 CCR8 SNORA6 CX3CR1 XIRP1 SLC25A38 WDR48 EEF1A1P24 GC03P039372
GH03H039447 1.2 Ensembl ENCODE dbSUPER 10.9 +39.6 39613 0 CTCF TFAP4 ZNF654 FOXA2 TRIM22 REST ZNF501 RAD21 TEAD3 ZNF217 CX3CR1 SNORA6 RPSA LOC105377038 GC03P039422
GH03H039346 1 ENCODE dbSUPER 10.5 -61.3 -61262 1 HDAC1 TAL1 BATF RELA FOSL1 TCF12 CTBP1 GATA2 NCOR1 EED RPSA SNORA6 HNRNPA1P21 ENSG00000238267 EEF1A1P24
GH03H039458 0.9 FANTOM5 dbSUPER 11 +50.4 50444 0 ZNF316 NFYB MAFG EMSY MOBP CX3CR1 SNORA6 RPSA TTC21A LOC105377038
GH03H039446 0.6 dbSUPER 11 +38.7 38675 1 FOSL1 CTCF EGR1 IKZF1 BHLHE40 SIRT6 MNT RPSA CX3CR1 MOBP SNORA6 LOC105377038 GC03P039422
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA6 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA6 Gene

Chromosome:
3
Start:
39,408,389 bp from pter
End:
39,408,539 bp from pter
Size:
151 bases
Orientation:
Plus strand

Genomic View for SNORA6 Gene

Genes around SNORA6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA6 Gene

Proteins for SNORA6 Gene

Post-translational modifications for SNORA6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA6 Gene

Domains & Families for SNORA6 Gene

Gene Families for SNORA6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA6 Gene

Function for SNORA6 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA6
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA6 Gene

Localization for SNORA6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA6 Gene

Pathways & Interactions for SNORA6 Gene

SuperPathways for SNORA6 Gene

No Data Available

Interacting Proteins for SNORA6 Gene

Gene Ontology (GO) - Biological Process for SNORA6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA6 Gene

Drugs & Compounds for SNORA6 Gene

No Compound Related Data Available

Transcripts for SNORA6 Gene

mRNA/cDNA for SNORA6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA6
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA6 Gene

No ASD Table

Relevant External Links for SNORA6 Gene

GeneLoc Exon Structure for
SNORA6
ECgene alternative splicing isoforms for
SNORA6

Expression for SNORA6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA6 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA6 Gene:

SNORA6

SOURCE GeneReport for Unigene cluster for SNORA6 Gene:

Hs.745521
genes like me logo Genes that share expression patterns with SNORA6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA6 Gene

Orthologs for SNORA6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA62 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA62 34
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA62 34
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24044 34
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA62 34
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA62 34
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA62 34
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA62 34
  • 83 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA62 34
  • 68 (a)
OneToMany
Species where no ortholog for SNORA6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA6 Gene

ENSEMBL:
Gene Tree for SNORA6 (if available)
TreeFam:
Gene Tree for SNORA6 (if available)

Paralogs for SNORA6 Gene

No data available for Paralogs for SNORA6 Gene

Variants for SNORA6 Gene

Sequence variations from dbSNP and Humsavar for SNORA6 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs397514759 Pathogenic 39,407,678(+) TCCTG(C/T)AAATG upstream-variant-2KB, reference, stop-gained
rs397514762 Pathogenic 39,408,633(+) GAGGA(A/C)CTGGG downstream-variant-500B, reference, missense
rs397514763 Pathogenic 39,408,644(+) AGAAG(C/T)TTCTG downstream-variant-500B, reference, missense
rs1000855140 -- 39,406,923(+) TGGCC(A/G)GGCTC intron-variant, upstream-variant-2KB
rs1003057654 -- 39,406,776(+) TCCGT(G/T)TAGCG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA6 Gene

Variant ID Type Subtype PubMed ID
nsv509822 OTHER sequence alteration 20534489

Relevant External Links for SNORA6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA6 Gene

Disorders for SNORA6 Gene

Relevant External Links for SNORA6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA6

No disorders were found for SNORA6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA6 Gene

Publications for SNORA6 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 60
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 60
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 60
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORA6 Gene

Sources for SNORA6 Gene

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