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Aliases for SNORA6 Gene

Subcategory (RNA class) for SNORA6 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA6 Gene

  • Small Nucleolar RNA, H/ACA Box 6 2 3
  • ACA6 Small Nucleolar RNA 3
  • Small Nucleolar RNA M2 3
  • ACA6 SnoRNA 3
  • SNORA63 6
  • RNU107 6
  • ACA6 3
  • RNE3 6

External Ids for SNORA6 Gene

Summaries for SNORA6 Gene

GeneCards Summary for SNORA6 Gene

SNORA6 (Small Nucleolar RNA, H/ACA Box 6) is a RNA Gene, and belongs to snoRNA RNA class. Among its related pathways are Alpha6-Beta4 Integrin Signaling Pathway and CFTR translational fidelity (class I mutations).

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA6 Gene

Genomics for SNORA6 Gene

Genomic Location for SNORA6 Gene

Start:
39,408,389 bp from pter
End:
39,408,539 bp from pter
Size:
151 bases
Orientation:
Plus strand

Genomic View for SNORA6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA6 Gene

Regulatory Elements for SNORA6 Gene

Proteins for SNORA6 Gene

Post-translational modifications for SNORA6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA6 Gene

Domains for SNORA6 Gene

Gene Families for SNORA6 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORA6: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORA6 Gene

Function for SNORA6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA6 Gene

Localization for SNORA6 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORA6 Gene

Pathways for SNORA6 Gene

genes like me logo Genes that share pathways with SNORA6: view

Pathways by source for SNORA6 Gene

Interacting Proteins for SNORA6 Gene

Gene Ontology (GO) - Biological Process for SNORA6 Gene

None

Transcripts for SNORA6 Gene

mRNA/cDNA for SNORA6 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA6 Gene

No ASD Table

Relevant External Links for SNORA6 Gene

GeneLoc Exon Structure for
SNORA6
ECgene alternative splicing isoforms for
SNORA6

Expression for SNORA6 Gene

mRNA expression in normal human tissues for SNORA6 Gene

SOURCE GeneReport for Unigene cluster for SNORA6 Gene Hs.745521

genes like me logo Genes that share expressions with SNORA6: view

Orthologs for SNORA6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA62 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA62 37
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA62 37
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24044 37
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA62 37
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA62 37
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA62 37
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA62 37
  • 83 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA62 37
  • 68 (a)
OneToMany
Species with no ortholog for SNORA6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA6 Gene

ENSEMBL:
Gene Tree for SNORA6 (if available)
TreeFam:
Gene Tree for SNORA6 (if available)

Paralogs for SNORA6 Gene

No data available for Paralogs for SNORA6 Gene

Variants for SNORA6 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA6 Gene

Variant ID Type Subtype PubMed ID
nsv509822 CNV Loss 20534489

Relevant External Links for SNORA6 Gene

HapMap Linkage Disequilibrium report
SNORA6

No data available for Sequence variations from dbSNP and Humsavar for SNORA6 Gene

Disorders for SNORA6 Gene

No disorders were found for SNORA6 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA6 Gene

Publications for SNORA6 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  5. A Proteomics Strategy for the Identification of FAT10-Modified Sites by Mass Spectrometry. (PMID: 23862649) Leng L. … Wang J. (J. Proteome Res. 2014) 3

Products for SNORA6 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA6
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA6
    • Block miRNA regulation of SNORA6 using miScript Target Protectors

    Sources for SNORA6 Gene

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