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Aliases for SNORA6 Gene

Subcategory (RNA class) for SNORA6 Gene


Quality Score for this RNA gene is


Aliases for SNORA6 Gene

  • Small Nucleolar RNA, H/ACA Box 6 2 3 5
  • ACA6 Small Nucleolar RNA 3
  • Small Nucleolar RNA M2 3
  • ACA6 SnoRNA 3
  • ACA6 3

External Ids for SNORA6 Gene

Previous GeneCards Identifiers for SNORA6 Gene

  • GC03P039429
  • GC03P039431
  • GC03P039449
  • GC03P039434
  • GC03P039438
  • GC03P039444
  • GC03P039451
  • GC03P039468

Summaries for SNORA6 Gene

GeneCards Summary for SNORA6 Gene

SNORA6 (Small Nucleolar RNA, H/ACA Box 6) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA6 Gene

Genomics for SNORA6 Gene

Regulatory Elements for SNORA6 Gene

Enhancers for SNORA6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G039361 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -46.4 -46383 1.6 BCOR MAX RELA GATA3 ZNF316 POLR2A EGR1 EED TRIM24 NR2F6 RPSA HNRNPA1P21 CCR8 SNORA6 CX3CR1 XIRP1 SLC25A38 WDR48 EEF1A1P24 GC03P039372
GH03G039447 1.2 Ensembl ENCODE dbSUPER 10.9 +39.6 39613 0.4 CTCF TFAP4 ZNF654 FOXA2 RNF2 TRIM22 ZNF501 REST RAD21 TEAD3 CX3CR1 SNORA6 RPSA LOC105377038 GC03P039422
GH03G039346 1.1 ENCODE dbSUPER 10.5 -61.3 -61262 1.3 HDAC1 HDGF PKNOX1 CBX3 TBL1XR1 TCF12 GATA2 ETV6 RELB IKZF2 RPSA SNORA6 HNRNPA1P21 ENSG00000238267 EEF1A1P24
GH03G039342 1 dbSUPER 10.5 -64.1 -64103 3.0 HDGF ATF1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF48 ZNF2 ZBTB7B RPSA SNORA62 SNORA6 GORASP1 CX3CR1 ENSG00000238267 EEF1A1P24
GH03G039458 0.9 FANTOM5 dbSUPER 11 +50.4 50444 0.3 ZNF316 NFYB MAFG EMSY MOBP CX3CR1 SNORA6 RPSA TTC21A LOC105377038
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA6 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA6 Gene

39,408,389 bp from pter
39,408,539 bp from pter
151 bases
Plus strand

Genomic View for SNORA6 Gene

Genes around SNORA6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA6 Gene

Proteins for SNORA6 Gene

Post-translational modifications for SNORA6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA6 Gene

Domains & Families for SNORA6 Gene

Gene Families for SNORA6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA6 Gene

Function for SNORA6 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA6 Gene

Localization for SNORA6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA6 Gene

Pathways & Interactions for SNORA6 Gene

SuperPathways for SNORA6 Gene

No Data Available

Interacting Proteins for SNORA6 Gene

Gene Ontology (GO) - Biological Process for SNORA6 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA6 Gene

Drugs & Compounds for SNORA6 Gene

No Compound Related Data Available

Transcripts for SNORA6 Gene

mRNA/cDNA for SNORA6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA6 Gene

No ASD Table

Relevant External Links for SNORA6 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA6 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA6 Gene:


SOURCE GeneReport for Unigene cluster for SNORA6 Gene:

genes like me logo Genes that share expression patterns with SNORA6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA6 Gene

Orthologs for SNORA6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA6 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA62 35
  • 99 (a)
(Bos Taurus)
Mammalia SNORA62 35
  • 93 (a)
(Canis familiaris)
Mammalia SNORA62 35
  • 89 (a)
(Mus musculus)
Mammalia Gm24044 35
  • 88 (a)
(Monodelphis domestica)
Mammalia SNORA62 35
  • 83 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA62 35
  • 81 (a)
(Gallus gallus)
Aves SNORA62 35
  • 70 (a)
(Anolis carolinensis)
Reptilia SNORA62 35
  • 83 (a)
(Danio rerio)
Actinopterygii SNORA62 35
  • 68 (a)
Species where no ortholog for SNORA6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA6 Gene

Gene Tree for SNORA6 (if available)
Gene Tree for SNORA6 (if available)

Paralogs for SNORA6 Gene

No data available for Paralogs for SNORA6 Gene

Variants for SNORA6 Gene

Sequence variations from dbSNP and Humsavar for SNORA6 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs397514759 Pathogenic 39,407,678(+) TCCTG(C/T)AAATG upstream-variant-2KB, reference, stop-gained
rs397514762 Pathogenic 39,408,633(+) GAGGA(A/C)CTGGG downstream-variant-500B, reference, missense
rs397514763 Pathogenic 39,408,644(+) AGAAG(C/T)TTCTG downstream-variant-500B, reference, missense
rs1000855140 -- 39,406,923(+) TGGCC(A/G)GGCTC intron-variant, upstream-variant-2KB
rs1003057654 -- 39,406,776(+) TCCGT(G/T)TAGCG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA6 Gene

Variant ID Type Subtype PubMed ID
nsv509822 OTHER sequence alteration 20534489

Relevant External Links for SNORA6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA6 Gene

Disorders for SNORA6 Gene

Relevant External Links for SNORA6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORA6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA6 Gene

Publications for SNORA6 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA6 Gene

Sources for SNORA6 Gene

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