Aliases for SNORA5C Gene
Subcategory (RNA class) for SNORA5C Gene
Quality Score for this RNA gene is
External Ids for SNORA5C Gene
- HGNC: 32590
- Entrez Gene: 677796
- Ensembl: ENSG00000201772
- OMIM: 611335
ORGUL Members for SNORA5C Gene
Previous GeneCards Identifiers for SNORA5C Gene
- GC07M045111
- GC07M045144
- GC07M045028
- GC07M045108
- GC07M045115
- GC07M045122
- GC07M045126
- GC07M045130
- GC07M045134
- GC07M045138
Summaries for SNORA5C Gene
-
Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA5C, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]
GeneCards Summary for SNORA5C Gene
SNORA5C (Small Nucleolar RNA, H/ACA Box 5C) is an RNA Gene, and is affiliated with the snoRNA class.
fRNAdb sequence ontologies for SNORA5C Gene - the ORGUL cluster for this gene includes several descriptions:
-
H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.
-
ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.
-
Small nucleolar RNA SNORA5: ACA5 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].
-
Small nucleolar RNA SNORA5: ACA5 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].
Additional gene information for SNORA5C Gene
No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA5C Gene
Genomics for SNORA5C Gene
GeneHancer (GH) Regulatory Elements for SNORA5C Gene
Regulatory Element Products
Genomic Locations for SNORA5C Gene
- chr7:45,104,906-45,105,042
- (GRCh38/hg38)
- Size:
- 137 bases
- Orientation:
- Minus strand
- chr7:45,144,505-45,144,641
- (GRCh37/hg19)
Genomic View for SNORA5C Gene
- Cytogenetic band:
-
- 7p13 by Ensembl
- 7p13 by Entrez Gene
- 7p13 by HGNC


RefSeq DNA sequence for SNORA5C Gene
ORGUL Member Location for SNORA5C Gene

Proteins for SNORA5C Gene
Post-translational modifications for SNORA5C Gene
Antibody Products
- Search GeneTex for Antibodies for SNORA5C
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORA5C
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- Search GeneTex for Proteins for SNORA5C
No data available for DME Specific Peptides for SNORA5C Gene
Domains & Families for SNORA5C Gene
Gene Families for SNORA5C Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA5C Gene
Function for SNORA5C Gene
Phenotypes From GWAS Catalog for SNORA5C Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
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-
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CRISPR Products
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- Applied Biological Materials CRISPR for SNORA5C
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
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Inhibitory RNA Products
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Clone Products
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-
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for SNORA5C
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA5C Gene
Localization for SNORA5C Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA5C Gene
Transcripts for SNORA5C Gene
mRNA/cDNA for SNORA5C Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for SNORA5C
- Applied Biological Materials CRISPR for SNORA5C
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
- Search ViGene Biosciences for SNORA5C
Inhibitory RNA Products
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Clone Products
- GenScript: Custom all cDNA clones Services for SNORA5C
- VectorBuilder custom plasmid, inducible vectors for SNORA5C
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-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for SNORA5C
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for SNORA5C Gene
NURSA nuclear receptor signaling pathways regulating expression of SNORA5C Gene:
SNORA5CSOURCE GeneReport for Unigene cluster for SNORA5C Gene:
Hs.692718Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA5C Gene
Orthologs for SNORA5C Gene
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | SNORA5 34 |
|
OneToOne | |
cow (Bos Taurus) |
Mammalia | SNORA5 34 |
|
OneToOne | |
dog (Canis familiaris) |
Mammalia | SNORA5 34 |
|
OneToOne | |
mouse (Mus musculus) |
Mammalia | Snora5c 34 |
|
OneToOne | |
oppossum (Monodelphis domestica) |
Mammalia | SNORA5 34 34 |
|
ManyToMany | |
platypus (Ornithorhynchus anatinus) |
Mammalia | SNORA5 34 |
|
OneToMany | |
chicken (Gallus gallus) |
Aves | SNORA5 34 |
|
ManyToMany | |
lizard (Anolis carolinensis) |
Reptilia | SNORA5 34 |
|
ManyToMany | |
zebrafish (Danio rerio) |
Actinopterygii | SNORA5 34 34 34 34 |
|
ManyToMany |
- Species where no ortholog for SNORA5C was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for SNORA5C Gene
No data available for Paralogs for SNORA5C Gene
Variants for SNORA5C Gene
SNP ID | Clin | Chr 07 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs1000253966 | -- | 45,105,067(-) | A/G | upstream_transcript_variant | |
rs1000692262 | -- | 45,106,011(-) | A/G | upstream_transcript_variant | |
rs1001520861 | -- | 45,105,646(-) | C/T | upstream_transcript_variant | |
rs1003254103 | -- | 45,106,340(-) | C/T | upstream_transcript_variant | |
rs1004852002 | -- | 45,106,943(-) | T/C | upstream_transcript_variant |
Additional Variant Information for SNORA5C Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORA5C
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA5C Gene
Disorders for SNORA5C Gene
Additional Disease Information for SNORA5C
No disorders were found for SNORA5C Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA5C Gene
Publications for SNORA5C Gene
- snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1 2 3 58
- Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1 2 3 58
- A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. (PMID: 16361266) Gu AD … Qu LH (Nucleic acids research 2005) 1 3 58
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
- The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
Products for SNORA5C Gene
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- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNORA5C
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for SNORA5C
- Search GeneTex for Proteins for SNORA5C
Sources for SNORA5C Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
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- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
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- (92) COMPARTMENTS
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- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
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- (107) ProteomicsDB
- (108) SCBT
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- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew