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Aliases for SNORA5B Gene

Subcategory (RNA class) for SNORA5B Gene


Quality Score for this RNA gene is


Aliases for SNORA5B Gene

  • Small Nucleolar RNA, H/ACA Box 5B 2 3
  • ACA5b 3

External Ids for SNORA5B Gene

ORGUL Members for SNORA5B Gene

Previous GeneCards Identifiers for SNORA5B Gene

  • GC07M045112
  • GC07M045145
  • GC07M045029

Summaries for SNORA5B Gene

GeneCards Summary for SNORA5B Gene

SNORA5B (Small Nucleolar RNA, H/ACA Box 5B) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORA5B Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA5: ACA5 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA5B Gene

Genomics for SNORA5B Gene

Regulatory Elements for SNORA5B Gene

Genomic Location for SNORA5B Gene

45,105,968 bp from pter
45,106,099 bp from pter
132 bases
Minus strand

Genomic View for SNORA5B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA5B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA5B Gene

ORGUL Member Location for SNORA5B Gene

ORGUL Member Location for SNORA5B gene

Proteins for SNORA5B Gene

Post-translational modifications for SNORA5B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA5B Gene

Domains for SNORA5B Gene

Gene Families for SNORA5B Gene

  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA5B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA5B Gene

Function for SNORA5B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA5B Gene

Localization for SNORA5B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA5B Gene

Pathways for SNORA5B Gene

SuperPathways for SNORA5B Gene

No Data Available

Interacting Proteins for SNORA5B Gene

Gene Ontology (GO) - Biological Process for SNORA5B Gene


No data available for Pathways by source for SNORA5B Gene

Transcripts for SNORA5B Gene

mRNA/cDNA for SNORA5B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA5B

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA5B Gene

No ASD Table

Relevant External Links for SNORA5B Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA5B Gene

mRNA expression in normal human tissues for SNORA5B Gene

SOURCE GeneReport for Unigene cluster for SNORA5B Gene Hs.693124

genes like me logo Genes that share expressions with SNORA5B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORA5B Gene

Orthologs for SNORA5B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA5B Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SNORA5 36
  • 65 (a)
(Monodelphis domestica)
Mammalia SNORA5 36
  • 75 (a)
(Mus musculus)
Mammalia Gm23346 36
  • 68 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA5 36
  • 64 (a)
(Pan troglodytes)
Mammalia SNORA5 36
  • 98 (a)
(Gallus gallus)
Aves SNORA5 36
  • 56 (a)
(Anolis carolinensis)
Reptilia SNORA5 36
  • 59 (a)
(Danio rerio)
Actinopterygii SNORA5 36
  • 61 (a)
  • 52 (a)
  • 54 (a)
  • 54 (a)
Species with no ortholog for SNORA5B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA5B Gene

Gene Tree for SNORA5B (if available)
Gene Tree for SNORA5B (if available)

Paralogs for SNORA5B Gene

No data available for Paralogs for SNORA5B Gene

Variants for SNORA5B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA5B Gene

Variant ID Type Subtype PubMed ID
nsv888001 CNV Loss 21882294

Relevant External Links for SNORA5B Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORA5B Gene

Disorders for SNORA5B Gene

No disorders were found for SNORA5B Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORA5B Gene

Publications for SNORA5B Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA5B Gene

Sources for SNORA5B Gene

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