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Aliases for SNORA5A Gene

Subcategory (RNA class) for SNORA5A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA5A Gene

  • Small Nucleolar RNA, H/ACA Box 5A 2 3 5
  • ACA5A/B/C 3
  • ACA5 3

External Ids for SNORA5A Gene

Previous GeneCards Identifiers for SNORA5A Gene

  • GC07M045110
  • GC07M045143
  • GC07M045027
  • GC07M045105
  • GC07M045107
  • GC07M045113
  • GC07M045119

Summaries for SNORA5A Gene

GeneCards Summary for SNORA5A Gene

SNORA5A (Small Nucleolar RNA, H/ACA Box 5A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA5A Gene

Genomics for SNORA5A Gene

Regulatory Elements for SNORA5A Gene

Enhancers for SNORA5A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F044613 0.9 FANTOM5 Ensembl ENCODE 12 +484.1 484091 13.0 HDGF ATF1 WRNIP1 FEZF1 DMAP1 GTF3C2 ZNF121 FOS JUNB MIER3 PURB DDX56 ZMIZ2 SNORA5C ENSG00000228434 SNORA5B SNORA5A ENSG00000228596 TBRG4 MYO1G
GH07F044733 1.6 FANTOM5 Ensembl ENCODE 12 +369.0 369008 4.1 KLF17 SIN3A RAD21 RFX5 GTF3C2 ZNF121 SCRT2 FOS CREM EGR2 PURB SNORA5C DDX56 ENSG00000228434 SNORA5B SNORA5A MYO1G TBRG4 POLR2J4 ZMIZ2
GH07F045015 0.2 Ensembl 11.4 +88.9 88882 0.4 HNF4G NR2F6 PPARG RAD21 NR2F2 RXRB PURB MYO1G SNORA5A SNORA5C SNORA5B TBRG4 NACAD H2AFV LINC01952 MIR4657
GH07F044111 0.4 Ensembl 10.1 +991.5 991525 2.7 GLIS2 SCRT2 CREM EGR2 ZNF202 SP3 ZEB2 SMARCB1 SP1 MBD2 POLM DDX56 MIR6838 SNORA5C ENSG00000228434 SNHG15 SNORA5A SPDYE1 SNORA5B GCK
GH07F045092 1.1 Ensembl ENCODE 0.4 +11.7 11730 1.2 TBP KLF1 ESRRA ZNF843 OSR2 ZFHX2 GLIS1 FOS ZNF600 SP7 SNHG15 ENSG00000228596 NACAD GC07M045104 GC07M045128 GC07M045132 SNORA5A PIR44785
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA5A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA5A Gene

Chromosome:
7
Start:
45,104,349 bp from pter
End:
45,104,482 bp from pter
Size:
134 bases
Orientation:
Minus strand

Genomic View for SNORA5A Gene

Genes around SNORA5A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA5A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA5A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA5A Gene

Proteins for SNORA5A Gene

Post-translational modifications for SNORA5A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA5A Gene

Domains & Families for SNORA5A Gene

Gene Families for SNORA5A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA5A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA5A Gene

Function for SNORA5A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA5A Gene

Localization for SNORA5A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA5A Gene

Pathways & Interactions for SNORA5A Gene

SuperPathways for SNORA5A Gene

No Data Available

Interacting Proteins for SNORA5A Gene

Gene Ontology (GO) - Biological Process for SNORA5A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA5A Gene

Transcripts for SNORA5A Gene

mRNA/cDNA for SNORA5A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA5A Gene

No ASD Table

Relevant External Links for SNORA5A Gene

GeneLoc Exon Structure for
SNORA5A
ECgene alternative splicing isoforms for
SNORA5A

Expression for SNORA5A Gene

mRNA expression in normal human tissues for SNORA5A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA5A Gene:

SNORA5A

SOURCE GeneReport for Unigene cluster for SNORA5A Gene:

Hs.689711
genes like me logo Genes that share expression patterns with SNORA5A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA5A Gene

Orthologs for SNORA5A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA5A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA5 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA5 35
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24313 35
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA5 35
  • 80 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORA5 35
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA5 35
  • 66 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA5 35
  • 61 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORA5 35
  • 67 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA5 35 35 35 35
  • 60 (a)
ManyToMany
Species where no ortholog for SNORA5A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA5A Gene

ENSEMBL:
Gene Tree for SNORA5A (if available)
TreeFam:
Gene Tree for SNORA5A (if available)

Paralogs for SNORA5A Gene

No data available for Paralogs for SNORA5A Gene

Variants for SNORA5A Gene

Sequence variations from dbSNP and Humsavar for SNORA5A Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs112916426 -- 45,105,522(+) TCTTC(A/C/T)ATTTC downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon, missense
rs113885365 -- 45,106,376(+) CAGCT(C/G/T)CAAGT intron-variant, upstream-variant-2KB
rs114784152 -- 45,104,028(+) TCCCG(A/G)CTAAG intron-variant, downstream-variant-500B
rs11541070 -- 45,104,606(-) CATCT(C/T)CTACC intron-variant, downstream-variant-500B, upstream-variant-2KB, reference, missense
rs137899623 -- 45,105,600(+) AGGGT(A/G)GCACA downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon

Relevant External Links for SNORA5A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA5A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA5A Gene

Disorders for SNORA5A Gene

Relevant External Links for SNORA5A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA5A

No disorders were found for SNORA5A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA5A Gene

Publications for SNORA5A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA5A Gene

Sources for SNORA5A Gene

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