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Aliases for SNORA59B Gene

Subcategory (RNA class) for SNORA59B Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNORA59B Gene

  • Small Nucleolar RNA, H/ACA Box 59B 2 3 5
  • ACA59 3

External Ids for SNORA59B Gene

ORGUL Members for SNORA59B Gene

Previous GeneCards Identifiers for SNORA59B Gene

  • GC17P019402
  • GC17P019477
  • GC17P018840
  • GC17P019559
  • GC17P019592
  • GC17P019608
  • GC17P019621

Summaries for SNORA59B Gene

GeneCards Summary for SNORA59B Gene

SNORA59B (Small Nucleolar RNA, H/ACA Box 59B) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA59B Gene

Genomics for SNORA59B Gene

Regulatory Elements for SNORA59B Gene

Enhancers for SNORA59B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F019718 1.2 Ensembl ENCODE 10.8 +162.7 162714 3.7 ELF3 MLX ARID4B THRB ZNF48 RAD21 RARA FOS CREM THAP11 ALDH3A1 SNORA59B SLC47A1 ENSG00000252349 TVP23B SLC47A2 ENSG00000262681 ENSG00000261033 ENSG00000264785
GH17F019519 1 Ensembl ENCODE 12 -37.1 -37075 1.7 BCOR HDAC1 ESRRA TAL1 ARID4B GATA2 NCOR1 HES1 SMARCE1 MTA2 SLC47A1 SNORA59B ENSG00000252349 TRW-CCA2-1
GH17F019762 1 Ensembl ENCODE 11.3 +205.5 205456 0.5 CTCF RAD21 ZFHX2 PATZ1 ZNF143 SMC3 PRDM10 ZNF600 MAFK THAP11 SNORA59B SLC47A1 ENSG00000252349 USP32P3 LOC441784 GC17M019770
GH17F019703 1 Ensembl ENCODE 10.9 +146.6 146618 1.3 SOX13 TFAP4 SAP130 RAD21 ZNF644 RARA GATA4 POLR2A NR2F6 SP5 SLC47A1 ENSG00000252349 SNORA59B ENSG00000231625 GC17M019705 GC17M019707
GH17F019580 0.5 ENCODE 12.9 +23.1 23124 0.3 ZNF121 KDM1A EZH2 SNORA59B SLC47A1 ENSG00000231625 ENSG00000252349 ENSG00000263107 SLC47A1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA59B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA59B Gene

Chromosome:
17
Start:
19,557,211 bp from pter
End:
19,557,911 bp from pter
Size:
701 bases
Orientation:
Plus strand

Genomic View for SNORA59B Gene

Genes around SNORA59B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA59B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA59B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA59B Gene

Proteins for SNORA59B Gene

Post-translational modifications for SNORA59B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA59B Gene

Domains & Families for SNORA59B Gene

Gene Families for SNORA59B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA59B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA59B Gene

Function for SNORA59B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA59B Gene

Localization for SNORA59B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA59B Gene

Pathways & Interactions for SNORA59B Gene

SuperPathways for SNORA59B Gene

No Data Available

Interacting Proteins for SNORA59B Gene

Gene Ontology (GO) - Biological Process for SNORA59B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA59B Gene

Transcripts for SNORA59B Gene

mRNA/cDNA for SNORA59B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA59B Gene

No ASD Table

Relevant External Links for SNORA59B Gene

GeneLoc Exon Structure for
SNORA59B
ECgene alternative splicing isoforms for
SNORA59B

Expression for SNORA59B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA59B Gene

mRNA differential expression in normal tissues according to GTEx for SNORA59B Gene

This gene is overexpressed in Adrenal Gland (x9.7) and Liver (x8.1).

NURSA nuclear receptor signaling pathways regulating expression of SNORA59B Gene:

SNORA59B
genes like me logo Genes that share expression patterns with SNORA59B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA59B Gene

Orthologs for SNORA59B Gene

Evolution for SNORA59B Gene

ENSEMBL:
Gene Tree for SNORA59B (if available)
TreeFam:
Gene Tree for SNORA59B (if available)

No data available for Orthologs for SNORA59B Gene

Paralogs for SNORA59B Gene

No data available for Paralogs for SNORA59B Gene

Variants for SNORA59B Gene

Sequence variations from dbSNP and Humsavar for SNORA59B Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1054715 -- 19,557,659(-) ATCTA(C/T)GGGTA intron-variant, nc-transcript-variant
rs111405639 -- 19,556,605(+) CCTGG(C/T)TGGAG intron-variant, upstream-variant-2KB
rs111619476 -- 19,557,141(+) GCCAG(C/T)AGATA intron-variant, upstream-variant-2KB
rs112486444 -- 19,556,580(+) TGAGA(G/T)GGAGT intron-variant, upstream-variant-2KB
rs113124177 -- 19,555,742(+) CAGGT(C/T)GAGTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA59B Gene

Variant ID Type Subtype PubMed ID
esv3582561 CNV loss 25503493
nsv1061317 CNV gain 25217958
nsv1061408 CNV gain 25217958
nsv428337 CNV loss 18775914
nsv517848 CNV gain 19592680

Relevant External Links for SNORA59B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA59B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA59B Gene

Disorders for SNORA59B Gene

Relevant External Links for SNORA59B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA59B

No disorders were found for SNORA59B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA59B Gene

Publications for SNORA59B Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA59B Gene

Sources for SNORA59B Gene

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