Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORA59A Gene

Subcategory (RNA class) for SNORA59A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA59A Gene

  • Small Nucleolar RNA, H/ACA Box 59A 2 3 5
  • ACA59 3

External Ids for SNORA59A Gene

Previous GeneCards Identifiers for SNORA59A Gene

  • GC01U901439
  • GC17P019403
  • GC17P019475
  • GC01P012567
  • GC01P011720

Summaries for SNORA59A Gene

GeneCards Summary for SNORA59A Gene

SNORA59A (Small Nucleolar RNA, H/ACA Box 59A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA59A Gene

Genomics for SNORA59A Gene

Regulatory Elements for SNORA59A Gene

Enhancers for SNORA59A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F013494 0.7 ENCODE 20.7 +988.0 987973 2.1 PKNOX1 ZFP64 ZNF223 ZNF140 ZNF266 ZNF514 ZNF101 ZNF664 ZNF791 ZNF354C SNORA59A LRRC38 ENSG00000259961 LOC102724856
GH01F011907 0.8 FANTOM5 ENCODE 18.4 -598.4 -598449 3.1 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC UBIAD1 SNORA59A RNU5E-1 RNU5E-4P LOC102724659 PRAMEF12 PRAMEF4 LINC01784 PRAMEF30P HNRNPCL1
GH01F012470 1.2 FANTOM5 Ensembl ENCODE 16.5 -30.6 -30622 11.6 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 SNORA59A PRAMEF12 PRAMEF11 LINC01784 PRAMEF30P HNRNPCL1 PRAMEF4 PRAMEF29P PRAMEF6 RNU5E-1
GH01F012484 1.2 FANTOM5 Ensembl ENCODE 12 -21.4 -21356 2.7 SOX13 SIX4 ESRRA ZMYM3 RAD21 GATA3 CTBP1 EZH2 TCF7L2 DPF2 SNORA59A RNU6ATAC18P DHRS3 GC01P012478 GC01M012503
GH01F012460 0.9 Ensembl ENCODE 11.6 -44.3 -44268 5.7 HDGF ATF1 ARNT SIN3A ARID4B ZNF48 YY1 ZNF121 GATA2 FOS SNORA59A DHRS3 GC01M012461 GC01M012433
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA59A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA59A Gene

Chromosome:
1
Start:
12,507,246 bp from pter
End:
12,507,397 bp from pter
Size:
152 bases
Orientation:
Plus strand

Genomic View for SNORA59A Gene

Genes around SNORA59A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA59A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA59A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA59A Gene

Proteins for SNORA59A Gene

Post-translational modifications for SNORA59A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA59A Gene

Domains & Families for SNORA59A Gene

Gene Families for SNORA59A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA59A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA59A Gene

Function for SNORA59A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA59A Gene

Localization for SNORA59A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA59A Gene

Pathways & Interactions for SNORA59A Gene

SuperPathways for SNORA59A Gene

No Data Available

Interacting Proteins for SNORA59A Gene

Gene Ontology (GO) - Biological Process for SNORA59A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA59A Gene

Transcripts for SNORA59A Gene

mRNA/cDNA for SNORA59A Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA59A Gene

Small nucleolar RNA, H/ACA box 59A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA59A Gene

No ASD Table

Relevant External Links for SNORA59A Gene

GeneLoc Exon Structure for
SNORA59A
ECgene alternative splicing isoforms for
SNORA59A

Expression for SNORA59A Gene

mRNA expression in normal human tissues for SNORA59A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA59A Gene:

SNORA59A

SOURCE GeneReport for Unigene cluster for SNORA59A Gene:

Hs.658450
genes like me logo Genes that share expression patterns with SNORA59A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA59A Gene

Orthologs for SNORA59A Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA59A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ACA59 35
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ACA59 35
  • 62 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia ACA59 35
  • 57 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ACA59 35 35 35 35
  • 49 (a)
OneToMany
Species where no ortholog for SNORA59A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA59A Gene

ENSEMBL:
Gene Tree for SNORA59A (if available)
TreeFam:
Gene Tree for SNORA59A (if available)

Paralogs for SNORA59A Gene

No data available for Paralogs for SNORA59A Gene

Variants for SNORA59A Gene

Sequence variations from dbSNP and Humsavar for SNORA59A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111306517 -- 12,507,656(+) CTAGA(A/G)GGCTG intron-variant, downstream-variant-500B
rs114382175 -- 12,505,318(+) GTGAT(A/G)CTGCC intron-variant, upstream-variant-2KB
rs114466933 -- 12,505,960(+) CACTT(C/G)CAGGT intron-variant, upstream-variant-2KB
rs114475846 -- 12,506,325(+) AAAGC(A/G)TTTTC intron-variant, upstream-variant-2KB
rs116492438 -- 12,506,128(+) AGGCC(C/T)GGGAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA59A Gene

Variant ID Type Subtype PubMed ID
esv3582561 CNV loss 25503493
nsv1061317 CNV gain 25217958
nsv1061408 CNV gain 25217958
nsv428337 CNV loss 18775914
nsv517848 CNV gain 19592680

Relevant External Links for SNORA59A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA59A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA59A Gene

Disorders for SNORA59A Gene

Relevant External Links for SNORA59A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA59A

No disorders were found for SNORA59A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA59A Gene

Publications for SNORA59A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  4. Lineage-specific gene duplication and loss in human and great ape evolution. (PMID: 15252450) Fortna A. … Sikela J.M. (PLoS Biol. 2004) 3 64

Products for SNORA59A Gene

Sources for SNORA59A Gene

Content
Loading form....