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Aliases for SNORA58 Gene

Subcategory (RNA class) for SNORA58 Gene

snoRNA

Quality Score for this RNA gene is

8

Aliases for SNORA58 Gene

  • Small Nucleolar RNA, H/ACA Box 58 2 3
  • ACA58 SnoRNA 3
  • ACA58 3

External Ids for SNORA58 Gene

Previous GeneCards Identifiers for SNORA58 Gene

  • GC03M132682
  • GC03M131197
  • GC03M128582

Summaries for SNORA58 Gene

GeneCards Summary for SNORA58 Gene

SNORA58 (Small Nucleolar RNA, H/ACA Box 58) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA58 Gene

Genomics for SNORA58 Gene

Regulatory Elements for SNORA58 Gene

Genomic Location for SNORA58 Gene

Start:
131,478,998 bp from pter
End:
131,479,233 bp from pter
Size:
236 bases
Orientation:
Minus strand

Genomic View for SNORA58 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA58 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA58 Gene

ORGUL Member Location for SNORA58 Gene

ORGUL Member Location for SNORA58 gene

Proteins for SNORA58 Gene

Post-translational modifications for SNORA58 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA58 Gene

Domains for SNORA58 Gene

Gene Families for SNORA58 Gene

HGNC:
  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA58: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA58 Gene

Function for SNORA58 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA58 Gene

Localization for SNORA58 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA58 Gene

Pathways for SNORA58 Gene

SuperPathways for SNORA58 Gene

No Data Available

Interacting Proteins for SNORA58 Gene

Gene Ontology (GO) - Biological Process for SNORA58 Gene

None

No data available for Pathways by source for SNORA58 Gene

Transcripts for SNORA58 Gene

mRNA/cDNA for SNORA58 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA58 Gene

Small nucleolar RNA, H/ACA box 58:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA58

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA58 Gene

No ASD Table

Relevant External Links for SNORA58 Gene

GeneLoc Exon Structure for
SNORA58
ECgene alternative splicing isoforms for
SNORA58

Expression for SNORA58 Gene

mRNA expression in normal human tissues for SNORA58 Gene

SOURCE GeneReport for Unigene cluster for SNORA58 Gene Hs.735762

genes like me logo Genes that share expressions with SNORA58: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORA58 Gene

Orthologs for SNORA58 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA58 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA58 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA58 36
  • 65 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Mir3068 36
  • 81 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA58 36
  • 64 (a)
ManyToMany
Species with no ortholog for SNORA58:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA58 Gene

ENSEMBL:
Gene Tree for SNORA58 (if available)
TreeFam:
Gene Tree for SNORA58 (if available)

Paralogs for SNORA58 Gene

No data available for Paralogs for SNORA58 Gene

Variants for SNORA58 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA58 Gene

Variant ID Type Subtype PubMed ID
nsv829724 CNV Gain 17160897

Relevant External Links for SNORA58 Gene

HapMap Linkage Disequilibrium report
SNORA58

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORA58 Gene

Disorders for SNORA58 Gene

No disorders were found for SNORA58 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA58 Gene

Publications for SNORA58 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA58 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA58
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA58
    • Block miRNA regulation of SNORA58 using miScript Target Protectors

    Sources for SNORA58 Gene

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