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Aliases for SNORA57 Gene

Subcategory (RNA class) for SNORA57 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA57 Gene

  • Small Nucleolar RNA, H/ACA Box 57 2 3 5
  • U99 3

External Ids for SNORA57 Gene

ORGUL Members for SNORA57 Gene

Previous GeneCards Identifiers for SNORA57 Gene

  • GC11U900715
  • GC11P062194
  • GC11P062432
  • GC11P058762

Summaries for SNORA57 Gene

GeneCards Summary for SNORA57 Gene

SNORA57 (Small Nucleolar RNA, H/ACA Box 57) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA57 Gene

Genomics for SNORA57 Gene

Regulatory Elements for SNORA57 Gene

Enhancers for SNORA57 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G062712 1.1 ENCODE dbSUPER 10.8 +48.5 48504 3.5 ELF3 FOXA2 RAD21 YY1 EGR1 CREM CEBPB PPARG ZNF592 NR2F2 TTC9C UBXN1 LBHD1 LRRN4CL POLR2G GANAB B3GAT3 UQCC3 ROM1 EML3
GH11G062694 0.9 ENCODE 12 +29.4 29443 1.1 HDGF HDAC1 PKNOX1 SIN3A RAD21 EGR1 ZNF143 CREM EGR2 ZNF654 BSCL2 TTC9C LBHD1 SNORA57 METTL12 ENSG00000255432 INTS5 GANAB UQCC3 EML3
GH11G062637 0.4 ENCODE 11.4 -26.8 -26752 2.6 ZNF366 ADNP EML3 LBHD1 UQCC3 ENSG00000255432 METTL12 SNORA57 ENSG00000254964 MTA2 TUT1 ENSG00000255508
GH11G062664 1.1 ENCODE 0.7 +0.7 674 4.0 HNRNPUL1 HDGF FOXA2 MLX CREB3L1 AGO1 ZFP64 WRNIP1 SIN3A ARID4B EML3 BSCL2 MTA2 TMEM179B TAF6L STX5 NXF1 INTS5 METTL12 SNHG1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA57 on UCSC Golden Path with GeneCards custom track

Promoters for SNORA57 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000040457 -222 2401 HNRNPUL1 HDGF FOXA2 MLX CREB3L1 AGO1 ZFP64 WRNIP1 SIN3A ARID4B

Genomic Location for SNORA57 Gene

Chromosome:
11
Start:
62,665,422 bp from pter
End:
62,665,570 bp from pter
Size:
149 bases
Orientation:
Plus strand

Genomic View for SNORA57 Gene

Genes around SNORA57 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA57 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA57 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA57 Gene

Proteins for SNORA57 Gene

Post-translational modifications for SNORA57 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA57 Gene

Domains & Families for SNORA57 Gene

Gene Families for SNORA57 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA57: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA57 Gene

Function for SNORA57 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA57 Gene

Localization for SNORA57 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA57 Gene

Pathways & Interactions for SNORA57 Gene

SuperPathways for SNORA57 Gene

No Data Available

Interacting Proteins for SNORA57 Gene

Gene Ontology (GO) - Biological Process for SNORA57 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA57 Gene

Drugs & Compounds for SNORA57 Gene

No Compound Related Data Available

Transcripts for SNORA57 Gene

mRNA/cDNA for SNORA57 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA57 Gene

Small nucleolar RNA, H/ACA box 57:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA57 Gene

No ASD Table

Relevant External Links for SNORA57 Gene

GeneLoc Exon Structure for
SNORA57
ECgene alternative splicing isoforms for
SNORA57

Expression for SNORA57 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA57 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA57 Gene:

SNORA57

SOURCE GeneReport for Unigene cluster for SNORA57 Gene:

Hs.687390
genes like me logo Genes that share expression patterns with SNORA57: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA57 Gene

Orthologs for SNORA57 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA57 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA57 35
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25822 35
  • 89 (a)
OneToMany
Gm26132 35
  • 85 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA57 35
  • 80 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA57 35
  • 80 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA57 35 35
  • 80 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORA57 35
  • 73 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA57 35 35 35
  • 66 (a)
ManyToMany
Species where no ortholog for SNORA57 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA57 Gene

ENSEMBL:
Gene Tree for SNORA57 (if available)
TreeFam:
Gene Tree for SNORA57 (if available)

Paralogs for SNORA57 Gene

No data available for Paralogs for SNORA57 Gene

Variants for SNORA57 Gene

Sequence variations from dbSNP and Humsavar for SNORA57 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1003009191 -- 62,665,794(+) CAGAT(C/T)TTCCC intron-variant, downstream-variant-500B, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs1003195972 -- 62,664,525(+) GGGGT(C/T)TCACC intron-variant, upstream-variant-2KB
rs1003659267 -- 62,664,236(+) ACTTT(C/T)CTGTA intron-variant, upstream-variant-2KB
rs1005510640 -- 62,663,454(+) GTAAT(C/T)CCAGC intron-variant, upstream-variant-2KB
rs1007577564 -- 62,665,300(+) TCCGC(A/G)GTGCG intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for SNORA57 Gene

Variant ID Type Subtype PubMed ID
nsv555174 CNV gain 21841781
nsv832182 CNV gain+loss 17160897

Relevant External Links for SNORA57 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA57

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA57 Gene

Disorders for SNORA57 Gene

Relevant External Links for SNORA57

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA57

No disorders were found for SNORA57 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA57 Gene

Publications for SNORA57 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  5. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P. … CavaillAc J. (Nucleic Acids Res. 2003) 3 64

Products for SNORA57 Gene

Sources for SNORA57 Gene

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