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Aliases for SNORA56 Gene

Subcategory (RNA class) for SNORA56 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA56 Gene

  • Small Nucleolar RNA, H/ACA Box 56 2 3 5
  • ACA56 SnoRNA 3
  • ACA56 3

External Ids for SNORA56 Gene

Previous GeneCards Identifiers for SNORA56 Gene

  • GC0XP153656
  • GC0XP154003

Summaries for SNORA56 Gene

Entrez Gene Summary for SNORA56 Gene

  • Biosynthesis of stable cellular RNAs such as tRNAs, rRNAs, snRNAs, and snoRNAs is aided by covalent nucleotide modification after transcription. The modified nucleotides are involved in correct RNA folding, establishment of correct RNA-RNA and RNA-protein interactions, and in the correct function of mature RNAs. The RNA encoded by this gene is thought to mediate the pseudouridylation of residue U1664 of 28S rRNA. [provided by RefSeq, Feb 2009]

GeneCards Summary for SNORA56 Gene

SNORA56 (Small Nucleolar RNA, H/ACA Box 56) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA56 Gene

Genomics for SNORA56 Gene

Regulatory Elements for SNORA56 Gene

Enhancers for SNORA56 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF154723 1.7 FANTOM5 Ensembl ENCODE 24.7 -43.0 -42998 18.0 HDGF PKNOX1 ZFP64 SIN3A ZNF2 GLIS2 ELK1 ZNF143 KLF7 FOS SNORA70 F8A1 SNORA56 EMD PLXNA3 HCFC1 F8A2 DKC1 MIR664B MPP1
GH0XF154796 1.5 FANTOM5 ENCODE 24.6 +26.4 26403 10.1 PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 FOS KLF13 F8A1 SNORA56 F8A2 EMD SNORA70 SNORA36A DKC1 MIR664B IKBKG TMLHE
GH0XF154122 1.6 FANTOM5 Ensembl ENCODE 14.8 -651.0 -650998 4.4 PKNOX1 ATF1 ARNT FEZF1 ELK1 GATA2 ZNF202 NCOA1 SMARCB1 MBD2 HCFC1 SNORA56 TMEM187 SNORA70 PLXNA3 RENBP MECP2 ARHGAP4 IKBKG PIR60620
GH0XF154794 1.3 FANTOM5 Ensembl ENCODE 13.3 +20.2 20179 1.6 SCRT1 MAZ HLF ZNF664 ZFP69B ZNF335 ZNF692 POLR2A GABPB1 CEBPA F8A1 SNORA36A DKC1 MIR664B MPP1 SNORA56 F8A2 FAM3A IKBKG GAB3
GH0XF153900 1.5 FANTOM5 Ensembl ENCODE 11.4 -872.1 -872098 5.4 HDGF HDAC1 ZFP64 KLF17 GLI4 ZBTB40 GLIS2 EGR1 GATA2 FOS SNORA70 TMEM187 EMD PLXNB3 LOC102723591 SNORA56 HCFC1 ENSG00000261773 LOC105373383 PLXNA3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA56 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA56 Gene

Chromosome:
X
Start:
154,774,998 bp from pter
End:
154,775,126 bp from pter
Size:
129 bases
Orientation:
Plus strand

Genomic View for SNORA56 Gene

Genes around SNORA56 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA56 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA56 Gene

Proteins for SNORA56 Gene

Post-translational modifications for SNORA56 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA56 Gene

Domains & Families for SNORA56 Gene

Gene Families for SNORA56 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA56: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA56 Gene

Function for SNORA56 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA56 Gene

Localization for SNORA56 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA56 Gene

Pathways & Interactions for SNORA56 Gene

SuperPathways for SNORA56 Gene

No Data Available

Interacting Proteins for SNORA56 Gene

Gene Ontology (GO) - Biological Process for SNORA56 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA56 Gene

Transcripts for SNORA56 Gene

mRNA/cDNA for SNORA56 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA56 Gene

No ASD Table

Relevant External Links for SNORA56 Gene

GeneLoc Exon Structure for
SNORA56
ECgene alternative splicing isoforms for
SNORA56

Expression for SNORA56 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA56 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA56 Gene:

SNORA56

SOURCE GeneReport for Unigene cluster for SNORA56 Gene:

Hs.745526
genes like me logo Genes that share expression patterns with SNORA56: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA56 Gene

Orthologs for SNORA56 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA56 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA56 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA56 35
  • 85 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA56 35
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA56 35
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA56 35 35 35 35
  • 74 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA56 35
  • 52 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA56 35
  • 58 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA56 35
  • 56 (a)
OneToOne
Species where no ortholog for SNORA56 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA56 Gene

ENSEMBL:
Gene Tree for SNORA56 (if available)
TreeFam:
Gene Tree for SNORA56 (if available)

Paralogs for SNORA56 Gene

No data available for Paralogs for SNORA56 Gene

Variants for SNORA56 Gene

Sequence variations from dbSNP and Humsavar for SNORA56 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs121912288 Pathogenic 154,773,152(+) CACAG(C/T)GGTCA nc-transcript-variant, upstream-variant-2KB, reference, missense
rs121912289 Pathogenic 154,774,672(+) CACAC(C/T)TGCCA nc-transcript-variant, upstream-variant-2KB, reference, missense
rs121912295 Pathogenic 154,774,651(+) GCATG(A/G)GAAGC nc-transcript-variant, upstream-variant-2KB, reference, missense
rs121912298 Pathogenic 154,773,144(+) TTAAT(A/G)ACCAC nc-transcript-variant, upstream-variant-2KB, reference, missense
rs121912299 Pathogenic 154,774,650(+) AGCAT(A/G)GGAAG nc-transcript-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for SNORA56 Gene

Variant ID Type Subtype PubMed ID
esv33784 CNV gain+loss 17666407

Relevant External Links for SNORA56 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA56

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA56 Gene

Disorders for SNORA56 Gene

Relevant External Links for SNORA56

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA56

No disorders were found for SNORA56 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA56 Gene

Publications for SNORA56 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA56 Gene

Sources for SNORA56 Gene

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