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Aliases for SNORA56 Gene

Subcategory (RNA class) for SNORA56 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA56 Gene

  • Small Nucleolar RNA, H/ACA Box 56 2 3
  • ACA56 SnoRNA 3
  • ACA56 3

External Ids for SNORA56 Gene

Summaries for SNORA56 Gene

Entrez Gene Summary for SNORA56 Gene

  • Biosynthesis of stable cellular RNAs such as tRNAs, rRNAs, snRNAs, and snoRNAs is aided by covalent nucleotide modification after transcription. The modified nucleotides are involved in correct RNA folding, establishment of correct RNA-RNA and RNA-protein interactions, and in the correct function of mature RNAs. The RNA encoded by this gene is thought to mediate the pseudouridylation of residue U1664 of 28S rRNA. [provided by RefSeq, Feb 2009]

GeneCards Summary for SNORA56 Gene

SNORA56 (Small Nucleolar RNA, H/ACA Box 56) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA56 Gene

Genomics for SNORA56 Gene

Genomic Location for SNORA56 Gene

Start:
154,774,998 bp from pter
End:
154,775,126 bp from pter
Size:
129 bases
Orientation:
Plus strand

Genomic View for SNORA56 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA56 Gene

Regulatory Elements for SNORA56 Gene

Proteins for SNORA56 Gene

Post-translational modifications for SNORA56 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA56 Gene

Domains for SNORA56 Gene

Gene Families for SNORA56 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORA56: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORA56 Gene

Function for SNORA56 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA56 Gene

Localization for SNORA56 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORA56 Gene

Pathways for SNORA56 Gene

SuperPathways for SNORA56 Gene

No Data Available

Interacting Proteins for SNORA56 Gene

Gene Ontology (GO) - Biological Process for SNORA56 Gene

None

No data available for Pathways by source for SNORA56 Gene

Transcripts for SNORA56 Gene

mRNA/cDNA for SNORA56 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA56 Gene

No ASD Table

Relevant External Links for SNORA56 Gene

GeneLoc Exon Structure for
SNORA56
ECgene alternative splicing isoforms for
SNORA56

Expression for SNORA56 Gene

mRNA expression in normal human tissues for SNORA56 Gene

SOURCE GeneReport for Unigene cluster for SNORA56 Gene Hs.745526

genes like me logo Genes that share expressions with SNORA56: view

Orthologs for SNORA56 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA56 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA56 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA56 37
  • 77 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA56 37
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA56 37
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA56 37
  • 74 (a)
OneToMany
SNORA56 37
  • 60 (a)
OneToMany
SNORA56 37
  • 74 (a)
OneToMany
SNORA56 37
  • 71 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA56 37
  • 52 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA56 37
  • 58 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA56 37
  • 56 (a)
OneToOne
Species with no ortholog for SNORA56:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA56 Gene

ENSEMBL:
Gene Tree for SNORA56 (if available)
TreeFam:
Gene Tree for SNORA56 (if available)

Paralogs for SNORA56 Gene

No data available for Paralogs for SNORA56 Gene

Variants for SNORA56 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA56 Gene

Variant ID Type Subtype PubMed ID
esv33784 CNV Gain+Loss 17666407

Relevant External Links for SNORA56 Gene

HapMap Linkage Disequilibrium report
SNORA56

No data available for Sequence variations from dbSNP and Humsavar for SNORA56 Gene

Disorders for SNORA56 Gene

No disorders were found for SNORA56 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA56 Gene

Publications for SNORA56 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA56 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA56
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA56
    • Block miRNA regulation of SNORA56 using miScript Target Protectors

    Sources for SNORA56 Gene

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