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Aliases for SNORA55 Gene

Subcategory (RNA class) for SNORA55 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA55 Gene

  • Small Nucleolar RNA, H/ACA Box 55 2 3
  • ACA55 SnoRNA 3
  • ACA55 3

External Ids for SNORA55 Gene

Summaries for SNORA55 Gene

GeneCards Summary for SNORA55 Gene

SNORA55 (Small Nucleolar RNA, H/ACA Box 55) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA55 Gene

Genomics for SNORA55 Gene

Genomic Location for SNORA55 Gene

Start:
39,567,374 bp from pter
End:
39,567,510 bp from pter
Size:
137 bases
Orientation:
Minus strand

Genomic View for SNORA55 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA55 Gene

Regulatory Elements for SNORA55 Gene

Proteins for SNORA55 Gene

Post-translational modifications for SNORA55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA55 Gene

Domains for SNORA55 Gene

Gene Families for SNORA55 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORA55: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORA55 Gene

Function for SNORA55 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA55 Gene

Localization for SNORA55 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORA55 Gene

Pathways for SNORA55 Gene

SuperPathways for SNORA55 Gene

No Data Available

Interacting Proteins for SNORA55 Gene

Gene Ontology (GO) - Biological Process for SNORA55 Gene

None

No data available for Pathways by source for SNORA55 Gene

Transcripts for SNORA55 Gene

mRNA/cDNA for SNORA55 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA55 Gene

Small nucleolar RNA, H/ACA box 55:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA55 Gene

No ASD Table

Relevant External Links for SNORA55 Gene

GeneLoc Exon Structure for
SNORA55
ECgene alternative splicing isoforms for
SNORA55

Expression for SNORA55 Gene

mRNA expression in normal human tissues for SNORA55 Gene

SOURCE GeneReport for Unigene cluster for SNORA55 Gene Hs.676660

genes like me logo Genes that share expressions with SNORA55: view

Orthologs for SNORA55 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA55 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA55 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA55 37
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA55 37
  • 90 (a)
OneToMany
SNORA55 37
  • 78 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm22154 37
  • 84 (a)
OneToMany
Gm22889 37
  • 88 (a)
OneToMany
Gm23974 37
  • 81 (a)
OneToMany
Gm24620 37
  • 85 (a)
OneToMany
Gm25370 37
  • 83 (a)
OneToMany
Gm25788 37
  • 84 (a)
OneToMany
Gm26048 37
  • 68 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA55 37
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA55 37
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA55 37
  • 82 (a)
OneToMany
SNORA55 37
  • 72 (a)
OneToMany
SNORA55 37
  • 82 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA55 37
  • 72 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA55 37
  • 60 (a)
OneToMany
SNORA55 37
  • 56 (a)
OneToMany
Species with no ortholog for SNORA55:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA55 Gene

ENSEMBL:
Gene Tree for SNORA55 (if available)
TreeFam:
Gene Tree for SNORA55 (if available)

Paralogs for SNORA55 Gene

No data available for Paralogs for SNORA55 Gene

Variants for SNORA55 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA55 Gene

Variant ID Type Subtype PubMed ID
nsv870829 CNV Gain 21882294
nsv7177 OTHER Inversion 18451855
nsv829649 CNV Loss 17160897

Relevant External Links for SNORA55 Gene

HapMap Linkage Disequilibrium report
SNORA55

No data available for Sequence variations from dbSNP and Humsavar for SNORA55 Gene

Disorders for SNORA55 Gene

Relevant External Links for SNORA55

Genetic Association Database (GAD)
SNORA55
genes like me logo Genes that share disorders with SNORA55: view

No data available for UniProtKB/Swiss-Prot for SNORA55 Gene

Publications for SNORA55 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  4. Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels. (PMID: 21300955) Dehghan A. … Chasman D.I. (Circulation 2011) 49

Products for SNORA55 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA55
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA55
    • Block miRNA regulation of SNORA55 using miScript Target Protectors

    Sources for SNORA55 Gene

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