Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORA54 Gene

Subcategory (RNA class) for SNORA54 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORA54 Gene

  • Small Nucleolar RNA, H/ACA Box 54 2 3 5
  • ACA54 SnoRNA 3
  • ACA54 3

External Ids for SNORA54 Gene

Previous GeneCards Identifiers for SNORA54 Gene

  • GC11M002943
  • GC11M002773
  • GC11M002985

Summaries for SNORA54 Gene

GeneCards Summary for SNORA54 Gene

SNORA54 (Small Nucleolar RNA, H/ACA Box 54) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SNORA54 include Factor X Deficiency and Chromophobe Adenoma.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA54 Gene

Genomics for SNORA54 Gene

Regulatory Elements for SNORA54 Gene

Enhancers for SNORA54 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G002939 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +22.9 22920 2.0 GTF2F1 PKNOX1 AGO1 MAX BMI1 RAD21 ZNF316 POLR2A HNF4G RCOR1 NAP1L4 ENSG00000183562 SLC22A18AS SNORA54 SLC22A18 KCNQ1 PHLDA2 KCNQ1-AS1 GC11M002963 GC11M002964
GH11G003035 1.6 Ensembl ENCODE dbSUPER 10.2 -73.0 -73024 2.5 HDGF PKNOX1 ARNT CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 NAP1L4 SNORA54 CARS-AS1 RNU1-91P GC11M003048
GH11G003000 1.4 FANTOM5 ENCODE dbSUPER 11.3 -37.1 -37135 2.1 HDGF NFIB SIN3A ARID4B RAD21 ETV6 IKZF2 EGR2 ZNF263 ZNF654 NAP1L4 CARS-AS1 CARS SNORA54 RNU1-91P ENSG00000224513 PHLDA2 SLC22A18 MRGPRG-AS1 MRGPRG
GH11G002986 1.3 ENCODE dbSUPER 10.9 -26.2 -26236 6.6 HDGF PKNOX1 CREB3L1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 YY1 FOS ENSG00000183562 CARS NAP1L4 SLC22A18 SNORA54 PHLDA2
GH11G002537 0.9 ENCODE dbSUPER 9.4 +424.7 424722 2.9 SOX5 SOX13 BHLHE40 CEBPB TEAD3 MIER3 IKZF1 GABPB1 SMAD4 HNRNPL CDKN1C SLC22A18AS SLC22A18 PHLDA2 NAP1L4 SNORA54 PIR42060 GC11P002540
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA54 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA54 Gene

Chromosome:
11
Start:
2,963,771 bp from pter
End:
2,963,893 bp from pter
Size:
123 bases
Orientation:
Minus strand

Genomic View for SNORA54 Gene

Genes around SNORA54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA54 Gene

Proteins for SNORA54 Gene

Post-translational modifications for SNORA54 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA54 Gene

Domains & Families for SNORA54 Gene

Gene Families for SNORA54 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA54: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA54 Gene

Function for SNORA54 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA54 Gene

Localization for SNORA54 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA54 gene
Compartment Confidence
extracellular 1
cytosol 1
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNORA54 Gene

Pathways & Interactions for SNORA54 Gene

SuperPathways for SNORA54 Gene

No Data Available

Interacting Proteins for SNORA54 Gene

Gene Ontology (GO) - Biological Process for SNORA54 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA54 Gene

Transcripts for SNORA54 Gene

mRNA/cDNA for SNORA54 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA54 Gene

No ASD Table

Relevant External Links for SNORA54 Gene

GeneLoc Exon Structure for
SNORA54
ECgene alternative splicing isoforms for
SNORA54

Expression for SNORA54 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA54 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA54 Gene:

SNORA54

SOURCE GeneReport for Unigene cluster for SNORA54 Gene:

Hs.689696
genes like me logo Genes that share expression patterns with SNORA54: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA54 Gene

Orthologs for SNORA54 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA54 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA54 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23297 35
  • 85 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA54 35
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA54 35
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA54 35
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA54 35 35
  • 60 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA54 35 35
  • 55 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA54 35
  • 49 (a)
OneToOne
Species where no ortholog for SNORA54 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA54 Gene

ENSEMBL:
Gene Tree for SNORA54 (if available)
TreeFam:
Gene Tree for SNORA54 (if available)

Paralogs for SNORA54 Gene

No data available for Paralogs for SNORA54 Gene

Variants for SNORA54 Gene

Sequence variations from dbSNP and Humsavar for SNORA54 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000309466 -- 2,964,581(+) GCTGG(G/T)TGTGG intron-variant, upstream-variant-2KB
rs1001306182 -- 2,965,597(+) AGACT(A/G)GAGTG intron-variant, upstream-variant-2KB
rs1004576640 -- 2,964,267(+) GAATG(C/G)TATCA intron-variant, upstream-variant-2KB
rs1006364708 -- 2,964,101(+) CAGGA(A/C)AACAT intron-variant, upstream-variant-2KB
rs1006699420 -- 2,965,196(+) AGCCA(G/T)CTTCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA54 Gene

Variant ID Type Subtype PubMed ID
nsv7648 CNV insertion 18451855
nsv832050 CNV loss 17160897

Relevant External Links for SNORA54 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA54 Gene

Disorders for SNORA54 Gene

MalaCards: The human disease database

(2) MalaCards diseases for SNORA54 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
factor x deficiency
  • disease, stuart-prower
chromophobe adenoma
  • chromophobe adenoma of the pituitary gland
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SNORA54

Human Genome Epidemiology (HuGE) Navigator
SNORA54
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA54
genes like me logo Genes that share disorders with SNORA54: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA54 Gene

Publications for SNORA54 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  4. Genome-wide association study of alcohol dependence implicates a region on chromosome 11. (PMID: 20201924) Edenberg H.J. … Foroud T. (Alcohol. Clin. Exp. Res. 2010) 3 64
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA54 Gene

Sources for SNORA54 Gene

Content
Loading form....