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Aliases for SNORA54 Gene

Subcategory (RNA class) for SNORA54 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORA54 Gene

  • Small Nucleolar RNA, H/ACA Box 54 2 3 5
  • ACA54 SnoRNA 3
  • ACA54 3

External Ids for SNORA54 Gene

Previous GeneCards Identifiers for SNORA54 Gene

  • GC11M002943
  • GC11M002773
  • GC11M002985

Summaries for SNORA54 Gene

GeneCards Summary for SNORA54 Gene

SNORA54 (Small Nucleolar RNA, H/ACA Box 54) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SNORA54 include Factor X Deficiency and Chromophobe Adenoma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA54 Gene

Genomics for SNORA54 Gene

Regulatory Elements for SNORA54 Gene

Enhancers for SNORA54 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F002939 1.3 FANTOM5 Ensembl ENCODE 11.7 +22.9 22920 2.0 GTF2F1 PKNOX1 MAX ZNF316 POLR2A HNF4G RCOR1 FOS NR2F6 MAFK NAP1L4 ENSG00000183562 SLC22A18AS SNORA54 SLC22A18 KCNQ1 PHLDA2 KCNQ1-AS1 PIR57698 GC11M002963
GH11F002997 0.5 ENCODE 11.3 -34.4 -34400 0.6 ZNF121 RFX1 SP7 CARS-AS1 CARS NAP1L4 SNORA54 RNU1-91P ENSG00000224513 PHLDA2 SLC22A18 MRGPRG MRGPRG-AS1
GH11F003000 1 FANTOM5 ENCODE 11.2 -37.1 -37135 2.1 HDGF ARID4B SIN3A RAD21 ETV6 EGR2 ZNF263 ZNF654 CEBPB REST NAP1L4 CARS-AS1 CARS SNORA54 RNU1-91P ENSG00000224513 PHLDA2 SLC22A18 MRGPRG MRGPRG-AS1
GH11F002986 0.2 ENCODE 10.8 -26.2 -26236 6.6 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 FOS ENSG00000183562 CARS NAP1L4 SLC22A18 SNORA54 PHLDA2
GH11F003035 0.7 Ensembl ENCODE 10.2 -73.0 -73024 2.5 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 TSSC2 CD81 OR7E12P NAP1L4 FAM86GP SNORA54 CARS-AS1 RNU1-91P GC11M003048
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA54 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA54 Gene

Chromosome:
11
Start:
2,963,771 bp from pter
End:
2,963,893 bp from pter
Size:
123 bases
Orientation:
Minus strand

Genomic View for SNORA54 Gene

Genes around SNORA54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA54 Gene

Proteins for SNORA54 Gene

Post-translational modifications for SNORA54 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA54 Gene

Domains & Families for SNORA54 Gene

Gene Families for SNORA54 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA54: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA54 Gene

Function for SNORA54 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA54 Gene

Localization for SNORA54 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SNORA54 Gene COMPARTMENTS Subcellular localization image for SNORA54 gene
Compartment Confidence
cytosol 1
extracellular 1
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNORA54 Gene

Pathways & Interactions for SNORA54 Gene

SuperPathways for SNORA54 Gene

No Data Available

Interacting Proteins for SNORA54 Gene

Gene Ontology (GO) - Biological Process for SNORA54 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA54 Gene

Transcripts for SNORA54 Gene

mRNA/cDNA for SNORA54 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA54 Gene

No ASD Table

Relevant External Links for SNORA54 Gene

GeneLoc Exon Structure for
SNORA54
ECgene alternative splicing isoforms for
SNORA54

Expression for SNORA54 Gene

mRNA expression in normal human tissues for SNORA54 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA54 Gene:

SNORA54

SOURCE GeneReport for Unigene cluster for SNORA54 Gene:

Hs.689696
genes like me logo Genes that share expression patterns with SNORA54: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA54 Gene

Orthologs for SNORA54 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA54 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA54 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23297 35
  • 85 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA54 35
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA54 35
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA54 35
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA54 35 35
  • 60 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA54 35 35
  • 55 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA54 35
  • 49 (a)
OneToOne
Species where no ortholog for SNORA54 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA54 Gene

ENSEMBL:
Gene Tree for SNORA54 (if available)
TreeFam:
Gene Tree for SNORA54 (if available)

Paralogs for SNORA54 Gene

No data available for Paralogs for SNORA54 Gene

Variants for SNORA54 Gene

Sequence variations from dbSNP and Humsavar for SNORA54 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10488672 -- 2,963,843(+) GCACC(A/G)GAATG intron-variant, nc-transcript-variant
rs10832974 -- 2,965,470(+) GACCG(C/T)CATCC intron-variant, upstream-variant-2KB
rs11024766 -- 2,963,415(+) TGGGG(C/G)AAGGA intron-variant, downstream-variant-500B
rs11024771 -- 2,965,859(+) ACTTA(A/C)ACAGA intron-variant, upstream-variant-2KB
rs111491805 -- 2,965,825(+) GCGCC(C/T)GGCCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA54 Gene

Variant ID Type Subtype PubMed ID
nsv7648 CNV insertion 18451855
nsv832050 CNV loss 17160897

Relevant External Links for SNORA54 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA54 Gene

Disorders for SNORA54 Gene

MalaCards: The human disease database

(2) MalaCards diseases for SNORA54 Gene - From: DISEASES

Disorder Aliases PubMed IDs
factor x deficiency
  • disease, stuart-prower
chromophobe adenoma
  • chromophobe adenoma of the pituitary gland
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SNORA54

Human Genome Epidemiology (HuGE) Navigator
SNORA54
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA54
genes like me logo Genes that share disorders with SNORA54: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA54 Gene

Publications for SNORA54 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  4. Genome-wide association study of alcohol dependence implicates a region on chromosome 11. (PMID: 20201924) Edenberg H.J. … Foroud T. (Alcohol. Clin. Exp. Res. 2010) 3 64
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA54 Gene

Sources for SNORA54 Gene

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