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Aliases for SNORA54 Gene

Subcategory (RNA class) for SNORA54 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORA54 Gene

  • Small Nucleolar RNA, H/ACA Box 54 2 3 5
  • ACA54 SnoRNA 3
  • ACA54 3

External Ids for SNORA54 Gene

Previous GeneCards Identifiers for SNORA54 Gene

  • GC11M002943
  • GC11M002773
  • GC11M002985

Summaries for SNORA54 Gene

GeneCards Summary for SNORA54 Gene

SNORA54 (Small Nucleolar RNA, H/ACA Box 54) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA54 Gene

Genomics for SNORA54 Gene

Regulatory Elements for SNORA54 Gene

Genomic Location for SNORA54 Gene

Chromosome:
11
Start:
2,963,771 bp from pter
End:
2,963,893 bp from pter
Size:
123 bases
Orientation:
Minus strand

Genomic View for SNORA54 Gene

Genes around SNORA54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA54 Gene

Proteins for SNORA54 Gene

Post-translational modifications for SNORA54 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA54 Gene

Domains & Families for SNORA54 Gene

Gene Families for SNORA54 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA54: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA54 Gene

Function for SNORA54 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA54 Gene

Localization for SNORA54 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SNORA54 Gene COMPARTMENTS Subcellular localization image for SNORA54 gene
Compartment Confidence
cytosol 1
extracellular 1
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNORA54 Gene

Pathways & Interactions for SNORA54 Gene

SuperPathways for SNORA54 Gene

No Data Available

Interacting Proteins for SNORA54 Gene

Gene Ontology (GO) - Biological Process for SNORA54 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA54 Gene

Drugs & Compounds for SNORA54 Gene

No Compound Related Data Available

Transcripts for SNORA54 Gene

mRNA/cDNA for SNORA54 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA54 Gene

No ASD Table

Relevant External Links for SNORA54 Gene

GeneLoc Exon Structure for
SNORA54
ECgene alternative splicing isoforms for
SNORA54

Expression for SNORA54 Gene

mRNA expression in normal human tissues for SNORA54 Gene

SOURCE GeneReport for Unigene cluster for SNORA54 Gene Hs.689696

genes like me logo Genes that share expression patterns with SNORA54: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORA54 Gene

Orthologs for SNORA54 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA54 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORA54 36
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA54 36
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA54 36
  • 62 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23297 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SNORA54 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA54 36
  • 60 (a)
OneToMany
SNORA54 36
  • 55 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA54 36
  • 55 (a)
OneToMany
SNORA54 36
  • 50 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA54 36
  • 49 (a)
OneToOne
Species with no ortholog for SNORA54:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA54 Gene

ENSEMBL:
Gene Tree for SNORA54 (if available)
TreeFam:
Gene Tree for SNORA54 (if available)

Paralogs for SNORA54 Gene

No data available for Paralogs for SNORA54 Gene

Variants for SNORA54 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA54 Gene

Variant ID Type Subtype PubMed ID
nsv832050 CNV Loss 17160897
nsv7648 CNV Insertion 18451855

Relevant External Links for SNORA54 Gene

HapMap Linkage Disequilibrium report
SNORA54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for SNORA54 Gene

Disorders for SNORA54 Gene

Relevant External Links for SNORA54

Human Genome Epidemiology (HuGE) Navigator
SNORA54
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA54

No disorders were found for SNORA54 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA54 Gene

Publications for SNORA54 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 67
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  4. Genome-wide association study of alcohol dependence implicates a region on chromosome 11. (PMID: 20201924) Edenberg H.J. … Foroud T. (Alcohol. Clin. Exp. Res. 2010) 3
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA54 Gene

Sources for SNORA54 Gene

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