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Aliases for SNORA53 Gene

Subcategory (RNA class) for SNORA53 Gene

snoRNA

Quality Score for this RNA gene is

3.2

Aliases for SNORA53 Gene

  • Small Nucleolar RNA, H/ACA Box 53 2 3
  • ACA53 3

External Ids for SNORA53 Gene

ORGUL Members for SNORA53 Gene

Previous GeneCards Identifiers for SNORA53 Gene

  • GC12P097517
  • GC12P098993
  • GC12P096054

Summaries for SNORA53 Gene

GeneCards Summary for SNORA53 Gene

SNORA53 (Small Nucleolar RNA, H/ACA Box 53) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORA53 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA53 Gene

Genomics for SNORA53 Gene

Regulatory Elements for SNORA53 Gene

Genomic Location for SNORA53 Gene

Start:
98,599,635 bp from pter
End:
98,599,884 bp from pter
Size:
250 bases
Orientation:
Plus strand

Genomic View for SNORA53 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA53 Gene

ORGUL Member Location for SNORA53 Gene

ORGUL Member Location for SNORA53 gene

Proteins for SNORA53 Gene

Post-translational modifications for SNORA53 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA53 Gene

Domains for SNORA53 Gene

Gene Families for SNORA53 Gene

HGNC:
  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA53: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA53 Gene

Function for SNORA53 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA53 Gene

Localization for SNORA53 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA53 Gene

Pathways for SNORA53 Gene

SuperPathways for SNORA53 Gene

No Data Available

Interacting Proteins for SNORA53 Gene

Gene Ontology (GO) - Biological Process for SNORA53 Gene

None

No data available for Pathways by source for SNORA53 Gene

Transcripts for SNORA53 Gene

mRNA/cDNA for SNORA53 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA53

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA53 Gene

No ASD Table

Relevant External Links for SNORA53 Gene

GeneLoc Exon Structure for
SNORA53
ECgene alternative splicing isoforms for
SNORA53

Expression for SNORA53 Gene

mRNA expression in normal human tissues for SNORA53 Gene

SOURCE GeneReport for Unigene cluster for SNORA53 Gene Hs.693250

genes like me logo Genes that share expressions with SNORA53: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORA53 Gene

Orthologs for SNORA53 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA53 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA53 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA53 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA53 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24119 36
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA53 36
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA53 36
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA53 36
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA53 36
  • 74 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA53 36
  • 51 (a)
OneToMany
SNORA53 36
  • 52 (a)
OneToMany
Species with no ortholog for SNORA53:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA53 Gene

ENSEMBL:
Gene Tree for SNORA53 (if available)
TreeFam:
Gene Tree for SNORA53 (if available)

Paralogs for SNORA53 Gene

No data available for Paralogs for SNORA53 Gene

Variants for SNORA53 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA53 Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER Inversion 18451855

Relevant External Links for SNORA53 Gene

HapMap Linkage Disequilibrium report
SNORA53

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORA53 Gene

Disorders for SNORA53 Gene

No disorders were found for SNORA53 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA53 Gene

Publications for SNORA53 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA53 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA53
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA53
    • Block miRNA regulation of SNORA53 using miScript Target Protectors

    Sources for SNORA53 Gene

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