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Aliases for SNORA52 Gene

Subcategory (RNA class) for SNORA52 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA52 Gene

  • Small Nucleolar RNA, H/ACA Box 52 2 3 5
  • ACA52 Small Nucleolar RNA 3
  • ACA52 SnoRNA 3
  • ACA52 3

External Ids for SNORA52 Gene

Previous GeneCards Identifiers for SNORA52 Gene

  • GC11P000803
  • GC11P000629

Summaries for SNORA52 Gene

GeneCards Summary for SNORA52 Gene

SNORA52 (Small Nucleolar RNA, H/ACA Box 52) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA52 Gene

Genomics for SNORA52 Gene

Regulatory Elements for SNORA52 Gene

Enhancers for SNORA52 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F000266 1.7 FANTOM5 Ensembl ENCODE 24.1 -541.6 -541629 6.8 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A YY1 ZNF766 CBX5 ZNF143 RIC8A IFITM2 PHRF1 PSMD13 SNORA52 SIRT3 PGGHG ENSG00000255237 ENSG00000254559 ODF3
GH11F000311 1.4 FANTOM5 ENCODE 21.2 -496.8 -496813 7.0 HDGF ATF1 PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A ARID4B ETS1 YY1 ENSG00000254910 IFITM3 PGGHG PHRF1 IFITM2 SNORA52 RIC8A ENSG00000251661 ENSG00000255026 NLRP6
GH11F000443 1.4 Ensembl ENCODE 16.8 -363.9 -363948 8.3 HDGF PKNOX1 ARNT MLX CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 TSPAN4 ENSG00000255237 LRRC56 SNORA52 PHRF1 PTDSS2 ANO9 RNH1 ENSG00000255158 HRAS
GH11F000924 1.4 FANTOM5 ENCODE 15.2 +115.1 115124 5.0 ATF1 CREB3L1 ARID4B SIN3A ZNF48 GTF3C2 ZNF766 GLIS2 ELK1 ZNF207 PHRF1 SNORA52 ENSG00000255237 ENSG00000269915 RIC8A AP2A2 POLR2L LRRC56 BRSK2 CEND1
GH11F001335 1.5 FANTOM5 Ensembl ENCODE 12.2 +524.9 524940 2.8 TBP PKNOX1 YBX1 RAD21 ZNF48 CREM ZNF202 SMAD5 CEBPB ZEB2 PHRF1 SNORA52 ENSG00000255237 TOLLIP TSPAN4 TOLLIP-AS1 BRSK2 LOC105376513 GC11P001310
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA52 on UCSC Golden Path with GeneCards custom track

Promoters for SNORA52 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000556920 -1781 2601 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for SNORA52 Gene

Chromosome:
11
Start:
811,681 bp from pter
End:
811,814 bp from pter
Size:
134 bases
Orientation:
Plus strand

Genomic View for SNORA52 Gene

Genes around SNORA52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA52 Gene

Proteins for SNORA52 Gene

Post-translational modifications for SNORA52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA52 Gene

Domains & Families for SNORA52 Gene

Gene Families for SNORA52 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA52: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA52 Gene

Function for SNORA52 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA52 Gene

Localization for SNORA52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA52 Gene

Pathways & Interactions for SNORA52 Gene

SuperPathways for SNORA52 Gene

No Data Available

Interacting Proteins for SNORA52 Gene

Gene Ontology (GO) - Biological Process for SNORA52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA52 Gene

Transcripts for SNORA52 Gene

mRNA/cDNA for SNORA52 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA52 Gene

No ASD Table

Relevant External Links for SNORA52 Gene

GeneLoc Exon Structure for
SNORA52
ECgene alternative splicing isoforms for
SNORA52

Expression for SNORA52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA52 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA52 Gene:

SNORA52

SOURCE GeneReport for Unigene cluster for SNORA52 Gene:

Hs.689713
genes like me logo Genes that share expression patterns with SNORA52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA52 Gene

Orthologs for SNORA52 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA52 35
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA52 35
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA52 35
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA52 35 35
  • 69 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snora52 35
  • 66 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA52 35
  • 64 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA52 35
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA52 35
  • 51 (a)
OneToOne
Species where no ortholog for SNORA52 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA52 Gene

ENSEMBL:
Gene Tree for SNORA52 (if available)
TreeFam:
Gene Tree for SNORA52 (if available)

Paralogs for SNORA52 Gene

No data available for Paralogs for SNORA52 Gene

Variants for SNORA52 Gene

Sequence variations from dbSNP and Humsavar for SNORA52 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10902222 -- 810,882(+) ATTGC(G/T)TTAAA intron-variant, upstream-variant-2KB
rs111562988 -- 810,870(+) GAGCT(A/G)CGTAA intron-variant, upstream-variant-2KB
rs111850318 -- 810,305(+) CATCA(A/G/T)GAAGA upstream-variant-2KB, reference, missense
rs112647807 -- 809,898(+) CTCAT(G/T)CGGCG upstream-variant-2KB
rs11306372 -- 810,898(+) AAAAA(-/A)GCAGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA52 Gene

Variant ID Type Subtype PubMed ID
nsv951272 CNV deletion 24416366
nsv8759 CNV gain 18304495
nsv832044 CNV loss 17160897
nsv552871 CNV loss 21841781
nsv469923 CNV loss 18288195
nsv1159791 CNV deletion 26073780
nsv1040044 CNV gain+loss 25217958
esv2759794 CNV loss 17122850
dgv182e199 CNV deletion 23128226
dgv1013n100 CNV gain 25217958

Relevant External Links for SNORA52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA52 Gene

Disorders for SNORA52 Gene

Relevant External Links for SNORA52

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA52

No disorders were found for SNORA52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA52 Gene

Publications for SNORA52 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  5. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 3 64

Products for SNORA52 Gene

Sources for SNORA52 Gene

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