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Aliases for SNORA51 Gene

Subcategory (RNA class) for SNORA51 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA51 Gene

  • Small Nucleolar RNA, H/ACA Box 51 2 3 5
  • ACA51 SnoRNA 3
  • ACA51 3

External Ids for SNORA51 Gene

Previous GeneCards Identifiers for SNORA51 Gene

  • GC20P002590
  • GC20P002596
  • GC20P002603
  • GC20P002608
  • GC20P002615
  • GC20P002635
  • GC20P002654
  • GC20P002716
  • GC20P002721
  • GC20P002732
  • GC20P002751

Summaries for SNORA51 Gene

GeneCards Summary for SNORA51 Gene

SNORA51 (Small Nucleolar RNA, H/ACA Box 51) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA51 Gene

Genomics for SNORA51 Gene

Regulatory Elements for SNORA51 Gene

Enhancers for SNORA51 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F002655 0.2 ENCODE 0.8 +0.3 340 0.2 SSRP1 POLR2A GC20P002837 SNORA51
GH20F002656 0.4 ENCODE 0.8 +0.9 923 0.2 HIC1 PAF1 POLR2A ZNF837 ITPA GC20P002837 SNORA51
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA51 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA51 Gene

Chromosome:
20
Start:
2,655,067 bp from pter
End:
2,655,198 bp from pter
Size:
132 bases
Orientation:
Plus strand

Genomic View for SNORA51 Gene

Genes around SNORA51 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA51 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA51 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA51 Gene

Proteins for SNORA51 Gene

Post-translational modifications for SNORA51 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA51 Gene

Domains & Families for SNORA51 Gene

Gene Families for SNORA51 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA51: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA51 Gene

Function for SNORA51 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA51 Gene

Localization for SNORA51 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA51 Gene

Pathways & Interactions for SNORA51 Gene

SuperPathways for SNORA51 Gene

No Data Available

Interacting Proteins for SNORA51 Gene

Gene Ontology (GO) - Biological Process for SNORA51 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA51 Gene

Transcripts for SNORA51 Gene

mRNA/cDNA for SNORA51 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA51 Gene

No ASD Table

Relevant External Links for SNORA51 Gene

GeneLoc Exon Structure for
SNORA51
ECgene alternative splicing isoforms for
SNORA51

Expression for SNORA51 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA51 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA51 Gene:

SNORA51

SOURCE GeneReport for Unigene cluster for SNORA51 Gene:

Hs.689698
genes like me logo Genes that share expression patterns with SNORA51: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA51 Gene

Orthologs for SNORA51 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA51 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA51 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24451 35
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA51 35
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA51 35
  • 88 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA51 35
  • 63 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA51 35
  • 59 (a)
OneToMany
Species where no ortholog for SNORA51 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA51 Gene

ENSEMBL:
Gene Tree for SNORA51 (if available)
TreeFam:
Gene Tree for SNORA51 (if available)

Paralogs for SNORA51 Gene

No data available for Paralogs for SNORA51 Gene

Variants for SNORA51 Gene

Sequence variations from dbSNP and Humsavar for SNORA51 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs2073194 Likely benign 2,653,290(-) AGCAC(A/G)GACTC nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon
rs2273137 Likely benign 2,654,566(-) CAGGA(C/T)CTCAG nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, missense
rs111978124 -- 2,653,426(+) GAGAG(A/T)TGTGG intron-variant, upstream-variant-2KB
rs112056040 -- 2,654,282(+) CTCTG(A/G)GCAAT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs115291519 -- 2,654,532(+) TTAGG(A/G)TACAA nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SNORA51 Gene

Variant ID Type Subtype PubMed ID
esv3644998 CNV gain 21293372
nsv1057464 CNV gain 25217958
nsv470535 CNV gain 18288195

Relevant External Links for SNORA51 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA51

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA51 Gene

Disorders for SNORA51 Gene

Relevant External Links for SNORA51

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA51

No disorders were found for SNORA51 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA51 Gene

Publications for SNORA51 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA51 Gene

Sources for SNORA51 Gene

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