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Aliases for SNORA49 Gene

Subcategory (RNA class) for SNORA49 Gene


Quality Score for this RNA gene is


Aliases for SNORA49 Gene

  • Small Nucleolar RNA, H/ACA Box 49 2 3 5
  • ACA49 SnoRNA 3
  • ACA49 3

External Ids for SNORA49 Gene

ORGUL Members for SNORA49 Gene

Previous GeneCards Identifiers for SNORA49 Gene

  • GC12P131081
  • GC12P132515
  • GC12P129401

Summaries for SNORA49 Gene

GeneCards Summary for SNORA49 Gene

SNORA49 (Small Nucleolar RNA, H/ACA Box 49) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA49 Gene

Genomics for SNORA49 Gene

Regulatory Elements for SNORA49 Gene

Enhancers for SNORA49 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F131984 0.7 Ensembl 12.1 -45.8 -45824 1.6 CTCF EED WT1 EGR2 EP400 PUS1 ENSG00000255992 SNORA49 EP400NL GC12P131952 GC12P132032
GH12F132065 0.9 Ensembl ENCODE 11.9 +34.9 34888 1.8 CTCF PKNOX1 SUZ12 MAX EBF1 ZIC2 POLR2A EED ETV6 CHD2 SNORA49 ENSG00000257000
GH12F132003 1.1 Ensembl ENCODE 11.7 -27.3 -27253 1.2 KLF1 SUZ12 RNF2 NRF1 KLF4 ZBTB8A ZNF48 HIC1 SREBF1 ZGPAT SNORA49 EP400 ENSG00000255992 PUS1 GC12P132032 GC12P131952
GH12F132004 1 ENCODE 11.7 -26.5 -26452 0.2 SUZ12 RNF2 NRF1 ELF1 ZNF48 ZGPAT SMARCA4 BCL6 ZFX NR2C2 SNORA49 EP400 ENSG00000255992 PUS1 GC12P132032 GC12P131952
GH12F132069 1 Ensembl ENCODE 11.5 +40.2 40164 2.9 HDGF CTCF KLF1 ESRRA MXI1 ZIC2 RAD21 ZFHX2 EGR1 POLR2A DDX51 SNORA49 EP400NL ENSG00000257000
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA49 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA49 Gene

132,031,224 bp from pter
132,031,360 bp from pter
137 bases
Plus strand

Genomic View for SNORA49 Gene

Genes around SNORA49 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA49 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA49 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA49 Gene

Proteins for SNORA49 Gene

Post-translational modifications for SNORA49 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA49 Gene

Domains & Families for SNORA49 Gene

Gene Families for SNORA49 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA49: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA49 Gene

Function for SNORA49 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA49 Gene

Localization for SNORA49 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA49 Gene

Pathways & Interactions for SNORA49 Gene

SuperPathways for SNORA49 Gene

No Data Available

Interacting Proteins for SNORA49 Gene

Gene Ontology (GO) - Biological Process for SNORA49 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA49 Gene

Transcripts for SNORA49 Gene

mRNA/cDNA for SNORA49 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA49 Gene

No ASD Table

Relevant External Links for SNORA49 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA49 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA49 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA49 Gene:


SOURCE GeneReport for Unigene cluster for SNORA49 Gene:

genes like me logo Genes that share expression patterns with SNORA49: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA49 Gene

Orthologs for SNORA49 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA49 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA49 35
  • 100 (a)
(Mus musculus)
Mammalia Gm26079 35
  • 88 (a)
(Monodelphis domestica)
Mammalia SNORA49 35
  • 85 (a)
(Canis familiaris)
Mammalia SNORA49 35
  • 84 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA49 35
  • 84 (a)
(Bos Taurus)
Mammalia SNORA49 35
  • 81 (a)
Species where no ortholog for SNORA49 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA49 Gene

Gene Tree for SNORA49 (if available)
Gene Tree for SNORA49 (if available)

Paralogs for SNORA49 Gene

No data available for Paralogs for SNORA49 Gene

Variants for SNORA49 Gene

Sequence variations from dbSNP and Humsavar for SNORA49 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs111666175 -- 132,031,425(+) TGTGC(A/G)TGAGG intron-variant, downstream-variant-500B
rs113573118 -- 132,031,841(+) TGAGC(C/T)GCCAC intron-variant, downstream-variant-500B
rs113899743 -- 132,031,712(+) CACCA(C/T)GCCCA intron-variant, downstream-variant-500B
rs115550354 -- 132,029,261(+) ATCTT(C/T)GCTCT intron-variant, upstream-variant-2KB
rs117215655 -- 132,030,995(+) TCATG(C/T)ACACG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA49 Gene

Variant ID Type Subtype PubMed ID
esv3631282 CNV gain 21293372
esv3631283 CNV gain 21293372
nsv560928 CNV gain 21841781

Relevant External Links for SNORA49 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA49 Gene

Disorders for SNORA49 Gene

Relevant External Links for SNORA49

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORA49 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA49 Gene

Publications for SNORA49 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA49 Gene

Sources for SNORA49 Gene

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