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Aliases for SNORA48B Gene

Subcategory (RNA class) for SNORA48B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA48B Gene

  • Small Nucleolar RNA, H/ACA Box 48B 2 3 5

External Ids for SNORA48B Gene

ORGUL Members for SNORA48B Gene

Previous GeneCards Identifiers for SNORA48B Gene

  • GC00U936714
  • GC0XU902322

Summaries for SNORA48B Gene

GeneCards Summary for SNORA48B Gene

SNORA48B (Small Nucleolar RNA, H/ACA Box 48B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA48B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA48B Gene

Genomics for SNORA48B Gene

Regulatory Elements for SNORA48B Gene

Enhancers for SNORA48B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH003518 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.5 11487 4.7 FOSL1 JUND FOS MXRA5 RNU6-146P ARSF GC0XM003534 SNORA48B GC0XP003465
GH0XH003548 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -17.1 -17104 1.3 CTCF EBF1 RAD21 ZBTB5 MXRA5 PIR50228 SNORA48B GC0XM003534
GH0XH003529 0.6 ENCODE dbSUPER 0.7 +2.4 2386 1.1 ATF2 MXRA5 SNORA48B GC0XM003534 GC0XP003465
GH0XH003525 1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.4 5400 2.7 MXRA5 GC0XM003534 SNORA48B GC0XP003465
GH0XH003528 0.5 ENCODE dbSUPER 0.7 +3.8 3837 0.2 GC0XM003534 SNORA48B GC0XP003465
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA48B on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA48B Gene

Genomic Locations for SNORA48B Gene
chrX:3,532,117-3,532,251
(GRCh38/hg38)
Size:
135 bases
Orientation:
Minus strand
chrX:3,450,158-3,450,292
(GRCh37/hg19)

Genomic View for SNORA48B Gene

Genes around SNORA48B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA48B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA48B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SNORA48B Gene

Proteins for SNORA48B Gene

Post-translational modifications for SNORA48B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA48B Gene

Domains & Families for SNORA48B Gene

Gene Families for SNORA48B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA48B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA48B Gene

Function for SNORA48B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA48B Gene

Localization for SNORA48B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA48B Gene

Pathways & Interactions for SNORA48B Gene

SuperPathways for SNORA48B Gene

No Data Available

Interacting Proteins for SNORA48B Gene

Gene Ontology (GO) - Biological Process for SNORA48B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA48B Gene

Drugs & Compounds for SNORA48B Gene

No Compound Related Data Available

Transcripts for SNORA48B Gene

mRNA/cDNA for SNORA48B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA48B Gene

No ASD Table

Relevant External Links for SNORA48B Gene

GeneLoc Exon Structure for
SNORA48B
ECgene alternative splicing isoforms for
SNORA48B

Expression for SNORA48B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA48B Gene

Orthologs for SNORA48B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA48B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA48 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA48 34
  • 83 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA48 34
  • 64 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25569 34
  • 62 (a)
ManyToMany
Species where no ortholog for SNORA48B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA48B Gene

ENSEMBL:
Gene Tree for SNORA48B (if available)
TreeFam:
Gene Tree for SNORA48B (if available)

Paralogs for SNORA48B Gene

No data available for Paralogs for SNORA48B Gene

Variants for SNORA48B Gene

Relevant External Links for SNORA48B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA48B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA48B Gene

Disorders for SNORA48B Gene

Relevant External Links for SNORA48B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA48B

No disorders were found for SNORA48B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA48B Gene

Publications for SNORA48B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 60

Products for SNORA48B Gene

Sources for SNORA48B Gene

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