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Aliases for SNORA48 Gene

Subcategory (RNA class) for SNORA48 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA48 Gene

  • Small Nucleolar RNA, H/ACA Box 48 2 3 5
  • ACA48 SnoRNA 3
  • SNORA48A 3
  • ACA48 3

External Ids for SNORA48 Gene

ORGUL Members for SNORA48 Gene

Previous GeneCards Identifiers for SNORA48 Gene

  • GC17P007424
  • GC17P007431
  • GC17P007433
  • GC17P007436
  • GC17P007439
  • GC17P007442
  • GC17P007444
  • GC17P007446
  • GC17P007478
  • GC17P007372
  • GC17P007575
  • GC17P007582
  • GC17P007586
  • GC17P007593
  • GC17P007631
  • GC17P007665

Summaries for SNORA48 Gene

GeneCards Summary for SNORA48 Gene

SNORA48 (Small Nucleolar RNA, H/ACA Box 48) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA48 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA48 Gene

Genomics for SNORA48 Gene

Regulatory Elements for SNORA48 Gene

Enhancers for SNORA48 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H007474 1.8 FANTOM5 ENCODE dbSUPER 55.4 -94.1 -94124 12 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 NFYC ZFP41 SSRP1 DVL2 PFAS SNORD10 POLR2A SNORA48 CTC1 KCTD11 NEURL4 CHRNB1 CNTROB
GH17H007833 1.9 FANTOM5 ENCODE dbSUPER 45.2 +265.0 265017 12 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 SP3 NFYC DVL2 PFAS CTC1 WRAP53 POLR2A CNTROB SNORD10 ENSG00000265749 NLGN2 KDM6B
GH17H007233 1.5 ENCODE dbSUPER 55.1 -336.0 -336033 11 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 SP3 NFYC MEF2D DVL2 CNTROB SNORD10 SNORA48 WRAP53 POLR2A NEURL4 KCTD11 NLGN2 PLSCR3
GH17H008172 1.5 ENCODE dbSUPER 42.6 +600.3 600254 5 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 ZC3H11A DVL2 POLR2A CNTROB CTC1 WRAP53 PFAS SNORD10 ENSG00000265749 KDM6B PER1
GH17H007571 1.7 Ensembl ENCODE dbSUPER 35.6 +3.4 3446 14 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC DVL2 PFAS CNTROB CTC1 POLR2A SNORD10 SNORA48 ENSG00000265749 SENP3 LOC100996842
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA48 on UCSC Golden Path with GeneCards custom track

Promoters for SNORA48 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000090877 -1513 2401 HNRNPUL1 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 YY1

Genomic Location for SNORA48 Gene

Chromosome:
17
Start:
7,574,713 bp from pter
End:
7,574,847 bp from pter
Size:
135 bases
Orientation:
Plus strand

Genomic View for SNORA48 Gene

Genes around SNORA48 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA48 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA48 Gene

Proteins for SNORA48 Gene

Post-translational modifications for SNORA48 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA48 Gene

Domains & Families for SNORA48 Gene

Gene Families for SNORA48 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA48: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA48 Gene

Function for SNORA48 Gene

Phenotypes From GWAS Catalog for SNORA48 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA48
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA48 Gene

Localization for SNORA48 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA48 Gene

Pathways & Interactions for SNORA48 Gene

SuperPathways for SNORA48 Gene

No Data Available

Interacting Proteins for SNORA48 Gene

Gene Ontology (GO) - Biological Process for SNORA48 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA48 Gene

Drugs & Compounds for SNORA48 Gene

No Compound Related Data Available

Transcripts for SNORA48 Gene

mRNA/cDNA for SNORA48 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA48 Gene

Small nucleolar RNA, H/ACA box 48:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA48
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA48 Gene

No ASD Table

Relevant External Links for SNORA48 Gene

GeneLoc Exon Structure for
SNORA48
ECgene alternative splicing isoforms for
SNORA48

Expression for SNORA48 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA48 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA48 Gene:

SNORA48

SOURCE GeneReport for Unigene cluster for SNORA48 Gene:

Hs.742408
genes like me logo Genes that share expression patterns with SNORA48: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA48 Gene

Orthologs for SNORA48 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA48 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA48 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA48 34
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA48 34
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA48 34
  • 67 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23716 34
  • 58 (a)
ManyToMany
Species where no ortholog for SNORA48 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA48 Gene

ENSEMBL:
Gene Tree for SNORA48 (if available)
TreeFam:
Gene Tree for SNORA48 (if available)

Paralogs for SNORA48 Gene

No data available for Paralogs for SNORA48 Gene

Variants for SNORA48 Gene

Sequence variations from dbSNP and Humsavar for SNORA48 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1001040424 -- 7,573,648(+) GCACA(A/T)GGTGG intron-variant, upstream-variant-2KB
rs1001530315 -- 7,573,369(+) CCGGC(C/T)GTTCA intron-variant, upstream-variant-2KB
rs1004590424 -- 7,573,187(+) GGAGG(C/T)GGCCG intron-variant, upstream-variant-2KB
rs1005380870 -- 7,573,191(+) GCGGC(C/G/T)GCCAC intron-variant, upstream-variant-2KB
rs1005974594 -- 7,573,993(+) CGTGA(A/G)CGCGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA48 Gene

Variant ID Type Subtype PubMed ID
esv2422288 CNV deletion 17116639
nsv457659 CNV loss 19166990
nsv574322 CNV loss 21841781
nsv960400 CNV duplication 23825009

Relevant External Links for SNORA48 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA48

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA48 Gene

Disorders for SNORA48 Gene

Relevant External Links for SNORA48

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA48

No disorders were found for SNORA48 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA48 Gene

Publications for SNORA48 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 60
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 60
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 3 60

Products for SNORA48 Gene

Sources for SNORA48 Gene

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