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Aliases for SNORA48 Gene

Subcategory (RNA class) for SNORA48 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA48 Gene

  • Small Nucleolar RNA, H/ACA Box 48 2 3
  • ACA48 SnoRNA 3
  • ACA48 3

External Ids for SNORA48 Gene

ORGUL Members for SNORA48 Gene

Summaries for SNORA48 Gene

GeneCards Summary for SNORA48 Gene

SNORA48 (Small Nucleolar RNA, H/ACA Box 48) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA48 Gene

Genomics for SNORA48 Gene

Genomic Location for SNORA48 Gene

Start:
7,574,713 bp from pter
End:
7,574,847 bp from pter
Size:
135 bases
Orientation:
Plus strand

Genomic View for SNORA48 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA48 Gene

Regulatory Elements for SNORA48 Gene

Proteins for SNORA48 Gene

Post-translational modifications for SNORA48 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA48 Gene

Domains for SNORA48 Gene

Gene Families for SNORA48 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORA48: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORA48 Gene

Function for SNORA48 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA48 Gene

Localization for SNORA48 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORA48 Gene

Pathways for SNORA48 Gene

SuperPathways for SNORA48 Gene

No Data Available

Interacting Proteins for SNORA48 Gene

Gene Ontology (GO) - Biological Process for SNORA48 Gene

None

No data available for Pathways by source for SNORA48 Gene

Transcripts for SNORA48 Gene

mRNA/cDNA for SNORA48 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA48 Gene

Small nucleolar RNA, H/ACA box 48:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA48 Gene

No ASD Table

Relevant External Links for SNORA48 Gene

GeneLoc Exon Structure for
SNORA48
ECgene alternative splicing isoforms for
SNORA48

Expression for SNORA48 Gene

mRNA expression in normal human tissues for SNORA48 Gene

SOURCE GeneReport for Unigene cluster for SNORA48 Gene Hs.742408

genes like me logo Genes that share expressions with SNORA48: view

Orthologs for SNORA48 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA48 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA48 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA48 37
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA48 37
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23716 37
  • 58 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA48 37
  • 67 (a)
OneToMany
Species with no ortholog for SNORA48:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA48 Gene

ENSEMBL:
Gene Tree for SNORA48 (if available)
TreeFam:
Gene Tree for SNORA48 (if available)

Paralogs for SNORA48 Gene

No data available for Paralogs for SNORA48 Gene

Variants for SNORA48 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA48 Gene

Variant ID Type Subtype PubMed ID
esv2422288 CNV Deletion 17116639
nsv457659 CNV Loss 19166990
nsv907651 CNV Loss 21882294

Relevant External Links for SNORA48 Gene

HapMap Linkage Disequilibrium report
SNORA48

No data available for Sequence variations from dbSNP and Humsavar for SNORA48 Gene

Disorders for SNORA48 Gene

No disorders were found for SNORA48 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA48 Gene

Publications for SNORA48 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 3

Products for SNORA48 Gene

Sources for SNORA48 Gene

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