Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORA48 Gene

Subcategory (RNA class) for SNORA48 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA48 Gene

  • Small Nucleolar RNA, H/ACA Box 48 2 3 5
  • ACA48 SnoRNA 3
  • SNORA48A 3
  • ACA48 3

External Ids for SNORA48 Gene

ORGUL Members for SNORA48 Gene

Previous GeneCards Identifiers for SNORA48 Gene

  • GC17P007424
  • GC17P007431
  • GC17P007433
  • GC17P007436
  • GC17P007439
  • GC17P007442
  • GC17P007444
  • GC17P007446
  • GC17P007478
  • GC17P007372
  • GC17P007575
  • GC17P007582
  • GC17P007586
  • GC17P007593

Summaries for SNORA48 Gene

GeneCards Summary for SNORA48 Gene

SNORA48 (Small Nucleolar RNA, H/ACA Box 48) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA48 Gene

Genomics for SNORA48 Gene

Regulatory Elements for SNORA48 Gene

Enhancers for SNORA48 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F007474 1.6 FANTOM5 ENCODE 56 -94.1 -94124 12.5 CREB3L1 ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 DVL2 SNORD10 SNORA48 CHRNB1 PFAS LOC105371523 KCTD11 CTC1 CNTROB MIR6883
GH17F007833 1.7 FANTOM5 ENCODE 46.6 +265.0 265017 12.5 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 DVL2 PFAS CTC1 SNORD10 LOC105371523 SNORA48 MIR6883 KCTD11 KDM6B CNTROB
GH17F007571 1.2 ENCODE 57.1 +3.4 3446 14.2 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 DVL2 SNORD10 SNORA48 PFAS LOC105371523 CTC1 CNTROB MIR6883 KCTD11 MIR324
GH17F007233 1.2 ENCODE 52.7 -336.0 -336033 11.3 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF263 SP3 DVL2 CNTROB SNORD10 SNORA48 KIAA0753 ELP5 SENP3 MIR6883 NEURL4 ZBTB4
GH17F007010 1.5 FANTOM5 ENCODE 41.9 -557.0 -557000 13.7 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 DVL2 SNORA48 SNORD10 CNTROB ENSG00000262089 NLGN2 KCTD11 SENP3 ENSG00000262067 LOC105371508
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA48 on UCSC Golden Path with GeneCards custom track

Promoters for SNORA48 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001804803 187 201 ELF3 SAP130 WRNIP1 ARID4B TEAD3 RARA HIC1 POLR2A ZNF366 CREM
ENSR00001804802 -1513 2801 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1

Genomic Location for SNORA48 Gene

Chromosome:
17
Start:
7,574,713 bp from pter
End:
7,574,847 bp from pter
Size:
135 bases
Orientation:
Plus strand

Genomic View for SNORA48 Gene

Genes around SNORA48 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA48 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA48 Gene

Proteins for SNORA48 Gene

Post-translational modifications for SNORA48 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA48 Gene

Domains & Families for SNORA48 Gene

Gene Families for SNORA48 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA48: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA48 Gene

Function for SNORA48 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA48 Gene

Localization for SNORA48 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA48 Gene

Pathways & Interactions for SNORA48 Gene

SuperPathways for SNORA48 Gene

No Data Available

Interacting Proteins for SNORA48 Gene

Gene Ontology (GO) - Biological Process for SNORA48 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA48 Gene

Transcripts for SNORA48 Gene

mRNA/cDNA for SNORA48 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA48 Gene

Small nucleolar RNA, H/ACA box 48:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA48 Gene

No ASD Table

Relevant External Links for SNORA48 Gene

GeneLoc Exon Structure for
SNORA48
ECgene alternative splicing isoforms for
SNORA48

Expression for SNORA48 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA48 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA48 Gene:

SNORA48

SOURCE GeneReport for Unigene cluster for SNORA48 Gene:

Hs.742408
genes like me logo Genes that share expression patterns with SNORA48: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA48 Gene

Orthologs for SNORA48 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA48 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA48 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA48 35
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA48 35
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA48 35
  • 67 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23716 35
  • 58 (a)
ManyToMany
Species where no ortholog for SNORA48 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA48 Gene

ENSEMBL:
Gene Tree for SNORA48 (if available)
TreeFam:
Gene Tree for SNORA48 (if available)

Paralogs for SNORA48 Gene

No data available for Paralogs for SNORA48 Gene

Variants for SNORA48 Gene

Sequence variations from dbSNP and Humsavar for SNORA48 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1057086 -- 7,574,620(+) TACGC(C/G)TATGG nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs111327662 -- 7,574,323(+) GAGAA(A/G)TGGAA intron-variant, upstream-variant-2KB
rs111633209 -- 7,573,317(+) CCTTA(A/G)ATCCA intron-variant, upstream-variant-2KB
rs111773551 -- 7,574,315(+) TGAGA(C/G)TGGAG intron-variant, upstream-variant-2KB
rs113685031 -- 7,573,363(+) AAGAA(A/G)CCGGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA48 Gene

Variant ID Type Subtype PubMed ID
esv2422288 CNV deletion 17116639
nsv457659 CNV loss 19166990
nsv574322 CNV loss 21841781
nsv960400 CNV duplication 23825009

Relevant External Links for SNORA48 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA48

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA48 Gene

Disorders for SNORA48 Gene

Relevant External Links for SNORA48

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA48

No disorders were found for SNORA48 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA48 Gene

Publications for SNORA48 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 3 64

Products for SNORA48 Gene

Sources for SNORA48 Gene

Content
Loading form....