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Aliases for SNORA47 Gene

Subcategory (RNA class) for SNORA47 Gene


Quality Score for this RNA gene is


Aliases for SNORA47 Gene

  • Small Nucleolar RNA, H/ACA Box 47 2 3 5
  • HBI-115 3

External Ids for SNORA47 Gene

ORGUL Members for SNORA47 Gene

Previous GeneCards Identifiers for SNORA47 Gene

  • GC05P076412
  • GC05M076412
  • GC05M076376
  • GC05M071582

Summaries for SNORA47 Gene

GeneCards Summary for SNORA47 Gene

SNORA47 (Small Nucleolar RNA, H/ACA Box 47) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA47 Gene

Genomics for SNORA47 Gene

Regulatory Elements for SNORA47 Gene

Enhancers for SNORA47 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F077029 1.1 ENCODE 10.6 +49.9 49900 2.5 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 AGGF1 ENSG00000250615 SNORA47 ZBED3-AS1 CRHBP
GH05F076867 1 Ensembl ENCODE 10.3 +212.4 212370 0.7 CTCF PKNOX1 ZNF76 RAD21 RFX5 POLR3A SCRT2 ZNF143 SMC3 FOS CRHBP ZBED3-AS1 SNORA47 ENSG00000225407 F2R S100Z PIR54977
GH05F077145 0.6 Ensembl 10.3 -65.5 -65530 1.0 JUND GATA2 ZNF366 JUN MAX ATF2 PDE8B ZBED3-AS1 SNORA47 WDR41 HMGB1P35 ZBED3
GH05F077076 1.3 Ensembl ENCODE 0.8 +3.2 3152 1.6 PKNOX1 CREB3L1 ARNT ARID4B SIN3A ZNF766 ZNF143 FOS ZNF263 JUNB RPL7P23 AGGF1 GC05M077073 GC05M077081 SNORA47
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA47 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA47 Gene

77,080,434 bp from pter
77,080,571 bp from pter
138 bases
Minus strand

Genomic View for SNORA47 Gene

Genes around SNORA47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA47 Gene

Proteins for SNORA47 Gene

Post-translational modifications for SNORA47 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA47 Gene

Domains & Families for SNORA47 Gene

Gene Families for SNORA47 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA47: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA47 Gene

Function for SNORA47 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA47 Gene

Localization for SNORA47 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA47 Gene

Pathways & Interactions for SNORA47 Gene

SuperPathways for SNORA47 Gene

No Data Available

Interacting Proteins for SNORA47 Gene

Gene Ontology (GO) - Biological Process for SNORA47 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA47 Gene

Transcripts for SNORA47 Gene

mRNA/cDNA for SNORA47 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA47 Gene

No ASD Table

Relevant External Links for SNORA47 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA47 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA47 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA47 Gene:


SOURCE GeneReport for Unigene cluster for SNORA47 Gene:

genes like me logo Genes that share expression patterns with SNORA47: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA47 Gene

Orthologs for SNORA47 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA47 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA47 35
  • 100 (a)
(Canis familiaris)
Mammalia SNORA47 35
  • 85 (a)
(Bos Taurus)
Mammalia SNORA47 35
  • 84 (a)
(Mus musculus)
Mammalia Snora47 35
  • 80 (a)
(Monodelphis domestica)
Mammalia SNORA47 35
  • 79 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA47 35
  • 62 (a)
(Gallus gallus)
Aves SNORA47 35
  • 65 (a)
(Anolis carolinensis)
Reptilia SNORA47 35
  • 64 (a)
(Danio rerio)
Actinopterygii SNORA47 35
  • 53 (a)
Species where no ortholog for SNORA47 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA47 Gene

Gene Tree for SNORA47 (if available)
Gene Tree for SNORA47 (if available)

Paralogs for SNORA47 Gene

No data available for Paralogs for SNORA47 Gene

Variants for SNORA47 Gene

Sequence variations from dbSNP and Humsavar for SNORA47 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs113506561 -- 77,081,028(+) ACACA(A/C)AGAGC intron-variant, upstream-variant-2KB
rs115505239 -- 77,081,273(+) CACTC(C/G)TCAAT intron-variant, upstream-variant-2KB
rs117925694 -- 77,081,894(+) GGAAG(C/T)GTACC intron-variant, upstream-variant-2KB
rs138638152 -- 77,081,355(+) TTTTT(A/T)ATTTT intron-variant, upstream-variant-2KB
rs139316881 -- 77,080,947(+) AAAAA(A/T)CTCGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA47 Gene

Variant ID Type Subtype PubMed ID
nsv1027236 CNV gain 25217958
nsv469515 CNV loss 16826518
nsv823102 CNV gain 20364138

Relevant External Links for SNORA47 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA47 Gene

Disorders for SNORA47 Gene

Relevant External Links for SNORA47

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORA47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA47 Gene

Publications for SNORA47 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  3. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight B.F. … . (Nat. Genet. 2010) 46 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA47 Gene

Sources for SNORA47 Gene

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