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Aliases for SNORA46 Gene

Subcategory (RNA class) for SNORA46 Gene


Quality Score for this RNA gene is


Aliases for SNORA46 Gene

  • Small Nucleolar RNA, H/ACA Box 46 2 3 5
  • ACA46 SnoRNA 3
  • ACA46 3

External Ids for SNORA46 Gene

Previous GeneCards Identifiers for SNORA46 Gene

  • GC16M057141
  • GC16M058582
  • GC16M044450

Summaries for SNORA46 Gene

GeneCards Summary for SNORA46 Gene

SNORA46 (Small Nucleolar RNA, H/ACA Box 46) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA46 Gene

Genomics for SNORA46 Gene

Regulatory Elements for SNORA46 Gene

Enhancers for SNORA46 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F058614 0.4 ENCODE 11.2 -65.8 -65826 0.5 CEBPB ZNF48 SNORA46 CNOT1 NDRG4 ENSG00000260865
GH16F058512 0.2 ENCODE 11 +36.4 36442 0.0 CTCF TFAP4 MXI1 USF1 SAP130 ARID4B MAX RAD21 ZNF2 TEAD3 CNOT1 SNORA46 GOT2 GINS3 GC16M058513 PIR50383
GH16F058511 0.8 ENCODE 11 +36.6 36552 0.2 ARID4B ZNF2 RAD21 SCRT2 ZNF143 MIXL1 THAP11 MXD4 USF2 MIER2 CNOT1 SNORA46 GOT2 GINS3 GC16M058513 PIR50383
GH16F058514 0.2 ENCODE 11 +33.1 33104 2.5 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 SP3 SETD6 CNOT1 SNORA46 GOT2 GINS3 PIR59635 GC16M058514
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA46 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA46 Gene

58,548,499 bp from pter
58,548,633 bp from pter
135 bases
Minus strand

Genomic View for SNORA46 Gene

Genes around SNORA46 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA46 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA46 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA46 Gene

Proteins for SNORA46 Gene

Post-translational modifications for SNORA46 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA46 Gene

Domains & Families for SNORA46 Gene

Gene Families for SNORA46 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA46: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA46 Gene

Function for SNORA46 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA46 Gene

Localization for SNORA46 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA46 Gene

Pathways & Interactions for SNORA46 Gene

SuperPathways for SNORA46 Gene

No Data Available

Interacting Proteins for SNORA46 Gene

Gene Ontology (GO) - Biological Process for SNORA46 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA46 Gene

Transcripts for SNORA46 Gene

mRNA/cDNA for SNORA46 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA46 Gene

Small nucleolar RNA, H/ACA box 46:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA46 Gene

No ASD Table

Relevant External Links for SNORA46 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA46 Gene

mRNA expression in normal human tissues for SNORA46 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA46 Gene:


SOURCE GeneReport for Unigene cluster for SNORA46 Gene:

genes like me logo Genes that share expression patterns with SNORA46: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA46 Gene

Orthologs for SNORA46 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA46 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA46 35
  • 100 (a)
(Canis familiaris)
Mammalia SNORA46 35
  • 92 (a)
(Bos Taurus)
Mammalia SNORA46 35
  • 91 (a)
(Mus musculus)
Mammalia Gm26493 35
  • 89 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA46 35
  • 71 (a)
(Monodelphis domestica)
Mammalia SNORA46 35
  • 70 (a)
(Gallus gallus)
Aves SNORA46 35
  • 71 (a)
Species where no ortholog for SNORA46 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA46 Gene

Gene Tree for SNORA46 (if available)
Gene Tree for SNORA46 (if available)

Paralogs for SNORA46 Gene

No data available for Paralogs for SNORA46 Gene

Variants for SNORA46 Gene

Sequence variations from dbSNP and Humsavar for SNORA46 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs112153082 -- 58,550,187(+) CTATA(A/C)GCTGC intron-variant, upstream-variant-2KB
rs112696257 -- 58,549,965(+) TCTAT(G/T)AACCA intron-variant, upstream-variant-2KB
rs113426941 -- 58,549,859(+) CCAAG(A/G/T)CATAA nc-transcript-variant, upstream-variant-2KB, reference, missense
rs113499384 -- 58,549,155(+) ATGGC(A/G)GTACA intron-variant, upstream-variant-2KB
rs116195252 -- 58,549,170(+) TAATC(C/G)CAGCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA46 Gene

Variant ID Type Subtype PubMed ID
esv2758650 CNV loss 17122850
nsv521338 CNV loss 19592680

Relevant External Links for SNORA46 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA46 Gene

Disorders for SNORA46 Gene

Relevant External Links for SNORA46

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORA46 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA46 Gene

Publications for SNORA46 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA46 Gene

Sources for SNORA46 Gene

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