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Aliases for SNORA41 Gene

Subcategory (RNA class) for SNORA41 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA41 Gene

  • Small Nucleolar RNA, H/ACA Box 41 2 3 5
  • ACA41 Small Nucleolar RNA 3
  • ACA41 SnoRNA 3
  • SNORA41A 3
  • ACA41 3

External Ids for SNORA41 Gene

ORGUL Members for SNORA41 Gene

Previous GeneCards Identifiers for SNORA41 Gene

  • GC02P206735
  • GC02P207027
  • GC02P207028
  • GC02P207031
  • GC02P207037
  • GC02P207044
  • GC02P207053

Summaries for SNORA41 Gene

GeneCards Summary for SNORA41 Gene

SNORA41 (Small Nucleolar RNA, H/ACA Box 41) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA41 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA41 Gene

Genomics for SNORA41 Gene

GeneHancer (GH) Regulatory Elements for SNORA41 Gene

Promoters and enhancers for SNORA41 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I206081 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 10.7 -77.8 -77790 6.7 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF207 ZNF143 ENSG00000227946 INO80D NDUFS1 ENSG00000231955 GCSHP3 SNORA41 SNORD51 EEF1B2 ZDBF2 GPR1
GH02I206078 Enhancer 0.7 ENCODE dbSUPER 11.2 -82.6 -82578 1.7 SP1 SOX13 SP5 POLR2A TEAD3 NDUFS1 GCSHP3 ENSG00000231955 EEF1B2 SNORA41 SNORD51 ENSG00000225610 GPR1 ENSG00000227946 INO80D
GH02I206077 Enhancer 0.7 ENCODE dbSUPER 11.2 -84.2 -84247 0.7 FOXA2 NFIA TEAD1 FOXA3 CEBPA ZNF384 GCSHP3 ENSG00000231955 EEF1B2 NDUFS1 SNORA41 SNORD51 ENSG00000225610 ENSG00000227946 INO80D RPL27P8
GH02I206250 Enhancer 0.6 Ensembl ENCODE 11 +88.3 88270 0.6 CTCF POLR2A RAD21 ZDBF2 RN7SKP200 GPR1 SNORA41 EEF1B2 SNORD51 NDUFS1 HMGN1P6 LOC100132849 GPR1-AS
GH02I206246 Enhancer 0.5 Ensembl 11.1 +84.1 84073 0.2 NBN ATF7 ELF1 DPF2 IRF4 RUNX3 GPR1 RN7SKP200 ZDBF2 SNORA41 EEF1B2 ADAM23 LOC100132849 HMGN1P6 GPR1-AS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA41 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA41 gene promoter:

Genomic Locations for SNORA41 Gene

Genomic Locations for SNORA41 Gene
chr2:206,162,228-206,162,359
(GRCh38/hg38)
Size:
132 bases
Orientation:
Plus strand
chr2:207,026,952-207,027,083
(GRCh37/hg19)

Genomic View for SNORA41 Gene

Genes around SNORA41 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA41 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA41 Gene

Proteins for SNORA41 Gene

Post-translational modifications for SNORA41 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA41 Gene

Domains & Families for SNORA41 Gene

Gene Families for SNORA41 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA41: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA41 Gene

Function for SNORA41 Gene

Phenotypes From GWAS Catalog for SNORA41 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA41 Gene

Localization for SNORA41 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA41 Gene

Pathways & Interactions for SNORA41 Gene

SuperPathways for SNORA41 Gene

No Data Available

Interacting Proteins for SNORA41 Gene

Gene Ontology (GO) - Biological Process for SNORA41 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA41 Gene

Drugs & Compounds for SNORA41 Gene

No Compound Related Data Available

Transcripts for SNORA41 Gene

mRNA/cDNA for SNORA41 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA41 Gene

No ASD Table

Relevant External Links for SNORA41 Gene

GeneLoc Exon Structure for
SNORA41
ECgene alternative splicing isoforms for
SNORA41

Expression for SNORA41 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA41 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA41 Gene:

SNORA41

SOURCE GeneReport for Unigene cluster for SNORA41 Gene:

Hs.742407
genes like me logo Genes that share expression patterns with SNORA41: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA41 Gene

Orthologs for SNORA41 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA41 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA41 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA41 34
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA41 34
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23723 34
  • 88 (a)
OneToMany
Snora41 34
  • 87 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA41 34
  • 81 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA41 34
  • 76 (a)
OneToOne
Species where no ortholog for SNORA41 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA41 Gene

ENSEMBL:
Gene Tree for SNORA41 (if available)
TreeFam:
Gene Tree for SNORA41 (if available)

Paralogs for SNORA41 Gene

No data available for Paralogs for SNORA41 Gene

Variants for SNORA41 Gene

Sequence variations from dbSNP and Humsavar for SNORA41 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1002736599 -- 206,160,853(+) A/G upstream_transcript_variant
rs1003365375 -- 206,160,478(+) C/T upstream_transcript_variant
rs1004150430 -- 206,162,413(+) T/C downstream_transcript_variant
rs1004945256 -- 206,160,298(+) C/A upstream_transcript_variant
rs1005321496 -- 206,161,558(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA41 Gene

Variant ID Type Subtype PubMed ID
nsv963768 CNV duplication 23825009

Additional Variant Information for SNORA41 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA41

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA41 Gene

Disorders for SNORA41 Gene

Additional Disease Information for SNORA41

No disorders were found for SNORA41 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA41 Gene

Publications for SNORA41 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Proteomic identification of common SCF ubiquitin ligase FBXO6-interacting glycoproteins in three kinds of cells. (PMID: 22268729) Liu B … Wang LS (Journal of proteome research 2012) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  5. Pseudouridine distribution in mammalian 18 S ribosomal RNA. A major cluster in the central region of the molecule. (PMID: 3342024) Maden EH … Wakeman JA (The Biochemical journal 1988) 3 58

Products for SNORA41 Gene

Sources for SNORA41 Gene

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