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Aliases for SNORA40C Gene

Subcategory (RNA class) for SNORA40C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA40C Gene

  • Small Nucleolar RNA, H/ACA Box 40C 2 3 5

External Ids for SNORA40C Gene

ORGUL Members for SNORA40C Gene

Previous GeneCards Identifiers for SNORA40C Gene

  • GC00U936768
  • GC06U903567

Summaries for SNORA40C Gene

GeneCards Summary for SNORA40C Gene

SNORA40C (Small Nucleolar RNA, H/ACA Box 40C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA40C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA40C Gene

Genomics for SNORA40C Gene

Genomic Location for SNORA40C Gene

Chromosome:
6
Start:
110,848,546 bp from pter
End:
110,848,673 bp from pter
Size:
128 bases
Orientation:
Plus strand

Genomic View for SNORA40C Gene

Genes around SNORA40C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA40C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA40C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements and RefSeq DNA sequence for SNORA40C Gene

Proteins for SNORA40C Gene

Post-translational modifications for SNORA40C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA40C Gene

Domains & Families for SNORA40C Gene

Gene Families for SNORA40C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA40C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA40C Gene

Function for SNORA40C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA40C Gene

Localization for SNORA40C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA40C Gene

Pathways & Interactions for SNORA40C Gene

SuperPathways for SNORA40C Gene

No Data Available

Interacting Proteins for SNORA40C Gene

Gene Ontology (GO) - Biological Process for SNORA40C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA40C Gene

Drugs & Compounds for SNORA40C Gene

No Compound Related Data Available

Transcripts for SNORA40C Gene

mRNA/cDNA for SNORA40C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA40C Gene

No ASD Table

Relevant External Links for SNORA40C Gene

GeneLoc Exon Structure for
SNORA40C
ECgene alternative splicing isoforms for
SNORA40C

Expression for SNORA40C Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA40C Gene

Orthologs for SNORA40C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA40C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA40 34
  • 95 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25909 34
  • 78 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA40 34
  • 77 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA40 34
  • 72 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA40 34
  • 63 (a)
OneToMany
Species where no ortholog for SNORA40C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA40C Gene

ENSEMBL:
Gene Tree for SNORA40C (if available)
TreeFam:
Gene Tree for SNORA40C (if available)

Paralogs for SNORA40C Gene

No data available for Paralogs for SNORA40C Gene

Variants for SNORA40C Gene

Relevant External Links for SNORA40C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA40C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA40C Gene

Disorders for SNORA40C Gene

Relevant External Links for SNORA40C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA40C

No disorders were found for SNORA40C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA40C Gene

Publications for SNORA40C Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 60

Products for SNORA40C Gene

Sources for SNORA40C Gene

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