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Aliases for SNORA40 Gene

Subcategory (RNA class) for SNORA40 Gene


Quality Score for this RNA gene is


Aliases for SNORA40 Gene

  • Small Nucleolar RNA, H/ACA Box 40 2 3 5
  • ACA40 SnoRNA 3
  • SNORA40A 3
  • ACA40 3

External Ids for SNORA40 Gene

Previous GeneCards Identifiers for SNORA40 Gene

  • GC11M093143
  • GC11M093152
  • GC11M093158
  • GC11M093164
  • GC11M093170
  • GC11M093180
  • GC11M093190
  • GC11M093200
  • GC11M093471
  • GC11M093478
  • GC11M089545
  • GC11M093486
  • GC11M093502
  • GC11M093510
  • GC11M093518
  • GC11M093528
  • GC11M093543
  • GC11M093567
  • GC11M093740
  • GC11M093752
  • GC11M093762
  • GC11M093773
  • GC11M093783
  • GC11M093794

Summaries for SNORA40 Gene

GeneCards Summary for SNORA40 Gene

SNORA40 (Small Nucleolar RNA, H/ACA Box 40) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA40 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA40 Gene

Genomics for SNORA40 Gene

Regulatory Elements for SNORA40 Gene

Enhancers for SNORA40 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H093783 1.1 ENCODE 11.3 -49.5 -49495 2.6 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS ZNF548 C11orf54 SNORA1 MED17 MRE11 ANKRD49 ENSG00000255233 LOC642791 ENSG00000254874 ENSG00000233536 SNORA40
GH11H093733 1.3 ENCODE dbSUPER 0.7 -3.1 -3100 9.9 HNRNPUL1 PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 ZNF207 FOS DEK MED17 CEP295 ANKRD49 MRE11 C11orf54 SNORA1 TAF1D ENSG00000255445 SMCO4 GC11M093806
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA40 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA40 Gene

Genomic Locations for SNORA40 Gene
127 bases
Minus strand

Genomic View for SNORA40 Gene

Genes around SNORA40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA40 Gene

Proteins for SNORA40 Gene

Post-translational modifications for SNORA40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA40 Gene

Domains & Families for SNORA40 Gene

Gene Families for SNORA40 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA40: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA40 Gene

Function for SNORA40 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA40 Gene

Localization for SNORA40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA40 Gene

Pathways & Interactions for SNORA40 Gene

SuperPathways for SNORA40 Gene

No Data Available

Interacting Proteins for SNORA40 Gene

Gene Ontology (GO) - Biological Process for SNORA40 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA40 Gene

Drugs & Compounds for SNORA40 Gene

No Compound Related Data Available

Transcripts for SNORA40 Gene

mRNA/cDNA for SNORA40 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA40 Gene

Small nucleolar RNA, H/ACA box 40:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA40 Gene

No ASD Table

Relevant External Links for SNORA40 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA40 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA40 Gene:


SOURCE GeneReport for Unigene cluster for SNORA40 Gene:

genes like me logo Genes that share expression patterns with SNORA40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA40 Gene

Orthologs for SNORA40 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA40 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA40 34
  • 99 (a)
(Monodelphis domestica)
Mammalia SNORA40 34
  • 78 (a)
(Mus musculus)
Mammalia Gm25183 34
  • 76 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA40 34
  • 73 (a)
(Gallus gallus)
Aves SNORA40 34
  • 65 (a)
Species where no ortholog for SNORA40 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA40 Gene

Gene Tree for SNORA40 (if available)
Gene Tree for SNORA40 (if available)

Paralogs for SNORA40 Gene

No data available for Paralogs for SNORA40 Gene

Variants for SNORA40 Gene

Sequence variations from dbSNP and Humsavar for SNORA40 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000687560 -- 93,735,293(+) AATAA(C/T)GAACA upstream-variant-2KB
rs1000823478 -- 93,735,035(+) AGGCT(G/T)GACCC downstream-variant-500B, upstream-variant-2KB
rs1001352414 -- 93,736,934(+) ATAAT(C/G)CCAAT intron-variant, upstream-variant-2KB
rs1001479163 -- 93,735,622(+) AAGAC(C/T)GCGGC intron-variant, upstream-variant-2KB
rs1002762038 -- 93,735,501(+) GCCTG(G/T)CTCTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA40 Gene

Variant ID Type Subtype PubMed ID
nsv983054 CNV duplication 23825009
nsv832232 CNV gain 17160897
esv3627294 CNV gain 21293372

Relevant External Links for SNORA40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA40 Gene

Disorders for SNORA40 Gene

Relevant External Links for SNORA40

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORA40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA40 Gene

Publications for SNORA40 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 60
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 60
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORA40 Gene

Sources for SNORA40 Gene

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