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Aliases for SNORA40 Gene

Subcategory (RNA class) for SNORA40 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA40 Gene

  • Small Nucleolar RNA, H/ACA Box 40 2 3 5
  • ACA40 SnoRNA 3
  • SNORA40A 3
  • ACA40 3

External Ids for SNORA40 Gene

Previous GeneCards Identifiers for SNORA40 Gene

  • GC11M093143
  • GC11M093152
  • GC11M093158
  • GC11M093164
  • GC11M093170
  • GC11M093180
  • GC11M093190
  • GC11M093200
  • GC11M093471
  • GC11M093478
  • GC11M089545
  • GC11M093486
  • GC11M093502
  • GC11M093510
  • GC11M093518
  • GC11M093528
  • GC11M093543
  • GC11M093567
  • GC11M093740
  • GC11M093752
  • GC11M093762
  • GC11M093773
  • GC11M093783

Summaries for SNORA40 Gene

GeneCards Summary for SNORA40 Gene

SNORA40 (Small Nucleolar RNA, H/ACA Box 40) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA40 Gene

Genomics for SNORA40 Gene

Regulatory Elements for SNORA40 Gene

Enhancers for SNORA40 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G093783 1.1 ENCODE 11.3 -49.5 -49495 2.6 PKNOX1 FOXA2 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF548 C11orf54 SNORA1 MED17 MRE11 ANKRD49 SNORA40 SNORA25 SNORA32 SNORA8 SNORD5
GH11G093733 1.4 ENCODE dbSUPER 0.7 -3.1 -3100 9.9 HNRNPUL1 PKNOX1 MLX CREB3L1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 YY1 MED17 C11orf54 CEP295 MRE11 TAF1D ANKRD49 SNORA1 SMCO4 SNORA40 GC11M093805
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA40 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA40 Gene

Chromosome:
11
Start:
93,735,110 bp from pter
End:
93,735,236 bp from pter
Size:
127 bases
Orientation:
Minus strand

Genomic View for SNORA40 Gene

Genes around SNORA40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA40 Gene

Proteins for SNORA40 Gene

Post-translational modifications for SNORA40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA40 Gene

Domains & Families for SNORA40 Gene

Gene Families for SNORA40 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA40: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA40 Gene

Function for SNORA40 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA40 Gene

Localization for SNORA40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA40 Gene

Pathways & Interactions for SNORA40 Gene

SuperPathways for SNORA40 Gene

No Data Available

Interacting Proteins for SNORA40 Gene

Gene Ontology (GO) - Biological Process for SNORA40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA40 Gene

Drugs & Compounds for SNORA40 Gene

No Compound Related Data Available

Transcripts for SNORA40 Gene

mRNA/cDNA for SNORA40 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA40 Gene

Small nucleolar RNA, H/ACA box 40:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA40 Gene

No ASD Table

Relevant External Links for SNORA40 Gene

GeneLoc Exon Structure for
SNORA40
ECgene alternative splicing isoforms for
SNORA40

Expression for SNORA40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA40 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA40 Gene:

SNORA40

SOURCE GeneReport for Unigene cluster for SNORA40 Gene:

Hs.732267
genes like me logo Genes that share expression patterns with SNORA40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA40 Gene

Orthologs for SNORA40 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA40 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA40 35
  • 99 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA40 35
  • 78 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25183 35
  • 76 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA40 35
  • 73 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA40 35
  • 65 (a)
OneToMany
Species where no ortholog for SNORA40 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA40 Gene

ENSEMBL:
Gene Tree for SNORA40 (if available)
TreeFam:
Gene Tree for SNORA40 (if available)

Paralogs for SNORA40 Gene

No data available for Paralogs for SNORA40 Gene

Variants for SNORA40 Gene

Sequence variations from dbSNP and Humsavar for SNORA40 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000687560 -- 93,735,293(+) AATAA(C/T)GAACA upstream-variant-2KB
rs1000823478 -- 93,735,035(+) AGGCT(G/T)GACCC downstream-variant-500B, upstream-variant-2KB
rs1001352414 -- 93,736,934(+) ATAAT(C/G)CCAAT intron-variant, upstream-variant-2KB
rs1001479163 -- 93,735,622(+) AAGAC(C/T)GCGGC intron-variant, upstream-variant-2KB
rs1002762038 -- 93,735,501(+) GCCTG(G/T)CTCTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA40 Gene

Variant ID Type Subtype PubMed ID
esv3627294 CNV gain 21293372
nsv832232 CNV gain 17160897
nsv983054 CNV duplication 23825009

Relevant External Links for SNORA40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA40 Gene

Disorders for SNORA40 Gene

Relevant External Links for SNORA40

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA40

No disorders were found for SNORA40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA40 Gene

Publications for SNORA40 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA40 Gene

Sources for SNORA40 Gene

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