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Aliases for SNORA40 Gene

Subcategory (RNA class) for SNORA40 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA40 Gene

  • Small Nucleolar RNA, H/ACA Box 40 2 3
  • ACA40 SnoRNA 3
  • ACA40 3

External Ids for SNORA40 Gene

Previous GeneCards Identifiers for SNORA40 Gene

  • GC11M093143
  • GC11M093152
  • GC11M093158
  • GC11M093164
  • GC11M093170
  • GC11M093180
  • GC11M093190
  • GC11M093200
  • GC11M093471
  • GC11M093478
  • GC11M089545
  • GC11M093486
  • GC11M093502
  • GC11M093510
  • GC11M093518
  • GC11M093528
  • GC11M093543
  • GC11M093567

Summaries for SNORA40 Gene

GeneCards Summary for SNORA40 Gene

SNORA40 (Small Nucleolar RNA, H/ACA Box 40) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA40 Gene

Genomics for SNORA40 Gene

Regulatory Elements for SNORA40 Gene

Genomic Location for SNORA40 Gene

Start:
93,735,110 bp from pter
End:
93,735,236 bp from pter
Size:
127 bases
Orientation:
Minus strand

Genomic View for SNORA40 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA40 Gene

Proteins for SNORA40 Gene

Post-translational modifications for SNORA40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA40 Gene

Domains for SNORA40 Gene

Gene Families for SNORA40 Gene

HGNC:
  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA40: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA40 Gene

Function for SNORA40 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA40 Gene

Localization for SNORA40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA40 Gene

Pathways for SNORA40 Gene

SuperPathways for SNORA40 Gene

No Data Available

Interacting Proteins for SNORA40 Gene

Gene Ontology (GO) - Biological Process for SNORA40 Gene

None

No data available for Pathways by source for SNORA40 Gene

Transcripts for SNORA40 Gene

mRNA/cDNA for SNORA40 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA40 Gene

Small nucleolar RNA, H/ACA box 40:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA40 Gene

No ASD Table

Relevant External Links for SNORA40 Gene

GeneLoc Exon Structure for
SNORA40
ECgene alternative splicing isoforms for
SNORA40

Expression for SNORA40 Gene

mRNA expression in normal human tissues for SNORA40 Gene

SOURCE GeneReport for Unigene cluster for SNORA40 Gene Hs.732267

genes like me logo Genes that share expressions with SNORA40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORA40 Gene

Orthologs for SNORA40 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA40 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA40 36
  • 99 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25183 36
  • 76 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA40 36
  • 78 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA40 36
  • 73 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA40 36
  • 65 (a)
OneToMany
Species with no ortholog for SNORA40:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA40 Gene

ENSEMBL:
Gene Tree for SNORA40 (if available)
TreeFam:
Gene Tree for SNORA40 (if available)

Paralogs for SNORA40 Gene

No data available for Paralogs for SNORA40 Gene

Variants for SNORA40 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA40 Gene

Variant ID Type Subtype PubMed ID
nsv898173 CNV Loss 21882294
nsv898181 CNV Gain 21882294
nsv898182 CNV Gain 21882294
nsv832232 CNV Gain 17160897

Relevant External Links for SNORA40 Gene

HapMap Linkage Disequilibrium report
SNORA40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORA40 Gene

Disorders for SNORA40 Gene

No disorders were found for SNORA40 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA40 Gene

Publications for SNORA40 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA40 Gene

Sources for SNORA40 Gene

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