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Aliases for SNORA4 Gene

Subcategory (RNA class) for SNORA4 Gene


Quality Score for this RNA gene is


Aliases for SNORA4 Gene

  • Small Nucleolar RNA, H/ACA Box 4 2 3 5
  • ACA4 Small Nucleolar RNA 3
  • ACA4 SnoRNA 3
  • ACA4 3

External Ids for SNORA4 Gene

Previous GeneCards Identifiers for SNORA4 Gene

  • GC03P187997
  • GC03P187999
  • GC03P186510
  • GC03P186514
  • GC03P186517
  • GC03P186520
  • GC03P186526
  • GC03P186531
  • GC03P186537
  • GC03P186546
  • GC03P186554
  • GC03P186572
  • GC03P186791
  • GC03P186797
  • GC03P186802
  • GC03P186808

Summaries for SNORA4 Gene

GeneCards Summary for SNORA4 Gene

SNORA4 (Small Nucleolar RNA, H/ACA Box 4) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA4 Gene

Genomics for SNORA4 Gene

Regulatory Elements for SNORA4 Gene

Enhancers for SNORA4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F187367 0.8 FANTOM5 ENCODE 16.7 +581.2 581240 2.7 IRF2 CBX3 ASH2L ZNF384 ZBTB40 RELA YY1 ZNF791 POLR2A CBX5 RTP4 ENSG00000200418 SNORA4 SNORA81 TBCCD1 RPS20P14 BCL6 ENSG00000280270
GH03F185958 0.4 ENCODE 16.7 -827.6 -827601 3.0 ATF1 ARID4B FEZF1 FOS REST TSHZ1 SMARCA4 ZNF610 HNF4A WT1 ENSG00000200418 SNORA4 SNORA81 RPL4P4 TRA2B ETV5 TBCCD1 ETV5-AS1 AHSG RPS20P14
GH03F187129 1.1 FANTOM5 Ensembl ENCODE 16.6 +343.0 342969 2.4 CTCF IRF2 PKNOX1 JUN RAD21 CBX5 ZNF26 ZNF143 FOS TRIM24 SNORA81 ENSG00000200418 SNORA63 SNORA4 TBCCD1 RPL39L EIF4A2 ADIPOQ RFC4 MIR1248
GH03F187412 0.2 Ensembl 16.5 +624.6 624589 0.4 POLR2A ZNF26 NFRKB CEBPB TAF7 SNORA4 SNORA81 ENSG00000200418 TBCCD1 SNORA63 ENSG00000239093 ENSG00000280270
GH03F186716 0.2 ENCODE 14.6 -70.4 -70373 1.0 SOX13 ZNF140 CEBPG RAD21 RARA TEAD3 YY1 HNF4G NR2F6 CREM SNORA4 TBCCD1 RFC4 SNORA81 ENSG00000200418 KNG1 SNORA63 ENSG00000226724
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA4 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA4 Gene

186,787,612 bp from pter
186,787,749 bp from pter
138 bases
Plus strand

Genomic View for SNORA4 Gene

Genes around SNORA4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA4 Gene

Proteins for SNORA4 Gene

Post-translational modifications for SNORA4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA4 Gene

Domains & Families for SNORA4 Gene

Gene Families for SNORA4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA4 Gene

Function for SNORA4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA4 Gene

Localization for SNORA4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA4 Gene

Pathways & Interactions for SNORA4 Gene

SuperPathways for SNORA4 Gene

No Data Available

Interacting Proteins for SNORA4 Gene

Gene Ontology (GO) - Biological Process for SNORA4 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA4 Gene

Transcripts for SNORA4 Gene

mRNA/cDNA for SNORA4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA4 Gene

No ASD Table

Relevant External Links for SNORA4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA4 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA4 Gene:


SOURCE GeneReport for Unigene cluster for SNORA4 Gene:

genes like me logo Genes that share expression patterns with SNORA4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA4 Gene

Orthologs for SNORA4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA4 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA4 35
  • 100 (a)
(Canis familiaris)
Mammalia SNORA4 35
  • 85 (a)
(Mus musculus)
Mammalia Gm24616 35
  • 84 (a)
Gm25588 35
  • 79 (a)
Gm25582 35
  • 76 (a)
Gm24460 35
  • 75 (a)
Gm24728 35
  • 70 (a)
Gm24500 35
  • 67 (a)
Gm26495 35
  • 67 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA4 35
  • 68 (a)
(Monodelphis domestica)
Mammalia SNORA4 35
  • 63 (a)
(Gallus gallus)
Aves SNORA4 35
  • 64 (a)
(Anolis carolinensis)
Reptilia SNORA4 35
  • 62 (a)
Species where no ortholog for SNORA4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA4 Gene

Gene Tree for SNORA4 (if available)
Gene Tree for SNORA4 (if available)

Paralogs for SNORA4 Gene

No data available for Paralogs for SNORA4 Gene

Variants for SNORA4 Gene

Sequence variations from dbSNP and Humsavar for SNORA4 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111446641 -- 186,786,424(+) AAGAC(-/AG)AGACG intron-variant, upstream-variant-2KB
rs111802039 -- 186,787,112(+) TTAAC(C/T)TCTAA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs112227828 -- 186,786,968(+) CTTTC(-/T)TTGAA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs112754953 -- 186,786,052(+) CCTTT(C/G)TAAGT upstream-variant-2KB, splice-donor-variant
rs112852782 -- 186,786,427(+) ACAGA(-/GA)CGCTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA4 Gene

Variant ID Type Subtype PubMed ID
dgv5005n100 CNV gain 25217958
esv2759206 CNV loss 17122850
esv34136 CNV loss 18971310
esv3893839 CNV gain 25118596
nsv1012615 CNV gain 25217958

Relevant External Links for SNORA4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA4 Gene

Disorders for SNORA4 Gene

Relevant External Links for SNORA4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORA4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA4 Gene

Publications for SNORA4 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA4 Gene

Sources for SNORA4 Gene

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