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Aliases for SNORA4 Gene

Subcategory (RNA class) for SNORA4 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA4 Gene

  • Small Nucleolar RNA, H/ACA Box 4 2 3
  • ACA4 Small Nucleolar RNA 3
  • ACA4 SnoRNA 3
  • ACA4 3

External Ids for SNORA4 Gene

Summaries for SNORA4 Gene

GeneCards Summary for SNORA4 Gene

SNORA4 (Small Nucleolar RNA, H/ACA Box 4) is a RNA Gene, and belongs to snoRNA RNA class. Among its related pathways are Translation Factors.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA4 Gene

Genomics for SNORA4 Gene

Genomic Location for SNORA4 Gene

Start:
186,787,612 bp from pter
End:
186,787,749 bp from pter
Size:
138 bases
Orientation:
Plus strand

Genomic View for SNORA4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA4 Gene

Regulatory Elements for SNORA4 Gene

Proteins for SNORA4 Gene

Post-translational modifications for SNORA4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA4 Gene

Domains for SNORA4 Gene

Gene Families for SNORA4 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORA4: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORA4 Gene

Function for SNORA4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA4 Gene

Localization for SNORA4 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORA4 Gene

Pathways for SNORA4 Gene

SuperPathways for SNORA4 Gene

Superpath Contained pathways
1 Translation Factors
genes like me logo Genes that share pathways with SNORA4: view

Pathways by source for SNORA4 Gene

1 BioSystems pathway for SNORA4 Gene

Interacting Proteins for SNORA4 Gene

Gene Ontology (GO) - Biological Process for SNORA4 Gene

None

Transcripts for SNORA4 Gene

mRNA/cDNA for SNORA4 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA4 Gene

No ASD Table

Relevant External Links for SNORA4 Gene

GeneLoc Exon Structure for
SNORA4
ECgene alternative splicing isoforms for
SNORA4

Expression for SNORA4 Gene

mRNA expression in normal human tissues for SNORA4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for SNORA4 Gene Hs.743897

genes like me logo Genes that share expressions with SNORA4: view

Orthologs for SNORA4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA4 37
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA4 37
  • 85 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24460 37
  • 75 (a)
ManyToMany
Gm24500 37
  • 67 (a)
ManyToMany
Gm24616 37
  • 84 (a)
ManyToMany
Gm24728 37
  • 70 (a)
ManyToMany
Gm25582 37
  • 76 (a)
ManyToMany
Gm25588 37
  • 79 (a)
ManyToMany
Gm26495 37
  • 67 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA4 37
  • 63 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA4 37
  • 68 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA4 37
  • 64 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA4 37
  • 62 (a)
OneToMany
Species with no ortholog for SNORA4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA4 Gene

ENSEMBL:
Gene Tree for SNORA4 (if available)
TreeFam:
Gene Tree for SNORA4 (if available)

Paralogs for SNORA4 Gene

No data available for Paralogs for SNORA4 Gene

Variants for SNORA4 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA4 Gene

Variant ID Type Subtype PubMed ID
dgv1541e1 CNV Complex 17122850
esv34136 CNV Loss 18971310

Relevant External Links for SNORA4 Gene

HapMap Linkage Disequilibrium report
SNORA4

No data available for Sequence variations from dbSNP and Humsavar for SNORA4 Gene

Disorders for SNORA4 Gene

No disorders were found for SNORA4 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA4 Gene

Publications for SNORA4 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA4 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA4
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA4
    • Block miRNA regulation of SNORA4 using miScript Target Protectors

    Sources for SNORA4 Gene

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