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Aliases for SNORA3C Gene

Subcategory (RNA class) for SNORA3C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA3C Gene

  • Small Nucleolar RNA, H/ACA Box 3C 2 3 5

External Ids for SNORA3C Gene

ORGUL Members for SNORA3C Gene

Previous GeneCards Identifiers for SNORA3C Gene

  • GC00U936719
  • GC16U902462

Summaries for SNORA3C Gene

GeneCards Summary for SNORA3C Gene

SNORA3C (Small Nucleolar RNA, H/ACA Box 3C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA3C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA3C Gene

Genomics for SNORA3C Gene

Regulatory Elements for SNORA3C Gene

Enhancers for SNORA3C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H002750 1.4 ENCODE dbSUPER 12.4 +43.5 43460 4.7 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF75A ZNF213-AS1 TSC2 ERVK13-1 ZNF263 E4F1 ENSG00000261938 SRRM2 NUBP2 ELOB
GH16H002867 1.4 ENCODE dbSUPER 11.4 -71.9 -71945 2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF207 ZNF143 FOS LOC101929566 ENSG00000200059 ENSG00000261240 FLYWCH2 ZG16B FLYWCH1 SNORA3C PRSS41 PRSS33 ELOB
GH16H002756 0.6 ENCODE 12.4 +40.0 40008 0.1 HDGF ZFHX2 ZNF473 POLR2A ZBTB33 EGR2 ELOB PRSS33 PRSS41 SNORA3C ZNF200 PRSS27 RNF151 PRSS22 ENSG00000260447 ENSG00000263235
GH16H002757 0.4 ENCODE 12.4 +40.3 40338 0.2 ZNF146 ELOB PRSS33 PRSS41 SNORA3C PRSS27 PRSS22 PKMYT1 GC16P002948 GC16M002769
GH16H002795 1.5 FANTOM5 Ensembl ENCODE 0.7 +0.4 449 1.5 HDAC1 TBP PKNOX1 INSM2 KLF17 ZNF366 KLF7 ATF7 FOS CREM MEFV PDPK1 SRRM2 ATP6V0C ZNF200 OR1F1 GC16M002798 SNORA3C PRSS33
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA3C on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA3C Gene

Genomic Locations for SNORA3C Gene
chr16:2,796,408-2,796,532
(GRCh38/hg38)
Size:
125 bases
Orientation:
Minus strand
chr16:2,846,409-2,846,533
(GRCh37/hg19)

Genomic View for SNORA3C Gene

Genes around SNORA3C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA3C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA3C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SNORA3C Gene

Proteins for SNORA3C Gene

Post-translational modifications for SNORA3C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA3C Gene

Domains & Families for SNORA3C Gene

Gene Families for SNORA3C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA3C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA3C Gene

Function for SNORA3C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA3C Gene

Localization for SNORA3C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA3C Gene

Pathways & Interactions for SNORA3C Gene

SuperPathways for SNORA3C Gene

No Data Available

Interacting Proteins for SNORA3C Gene

Gene Ontology (GO) - Biological Process for SNORA3C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA3C Gene

Drugs & Compounds for SNORA3C Gene

No Compound Related Data Available

Transcripts for SNORA3C Gene

mRNA/cDNA for SNORA3C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA3C Gene

No ASD Table

Relevant External Links for SNORA3C Gene

GeneLoc Exon Structure for
SNORA3C
ECgene alternative splicing isoforms for
SNORA3C

Expression for SNORA3C Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA3C Gene

Orthologs for SNORA3C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA3C Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia SNORA3 34
  • 76 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORA3 34
  • 66 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA3 34
  • 64 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA3 34 34
  • 61 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia SNORA3 34
  • 55 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA3 34
  • 55 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA3 34 34 34 34
  • 61 (a)
ManyToMany
Species where no ortholog for SNORA3C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA3C Gene

ENSEMBL:
Gene Tree for SNORA3C (if available)
TreeFam:
Gene Tree for SNORA3C (if available)

Paralogs for SNORA3C Gene

No data available for Paralogs for SNORA3C Gene

Variants for SNORA3C Gene

Relevant External Links for SNORA3C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA3C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA3C Gene

Disorders for SNORA3C Gene

Relevant External Links for SNORA3C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA3C

No disorders were found for SNORA3C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA3C Gene

Publications for SNORA3C Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 60

Products for SNORA3C Gene

Sources for SNORA3C Gene

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