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Aliases for SNORA38B Gene

Subcategory (RNA class) for SNORA38B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA38B Gene

  • Small Nucleolar RNA, H/ACA Box 38B 2 3
  • Small Nucleolar RNA, H/ACA Box 38B (Retrotransposed) 2

External Ids for SNORA38B Gene

ORGUL Members for SNORA38B Gene

Previous GeneCards Identifiers for SNORA38B Gene

  • GC17U900833
  • GC17P063169
  • GC17P065736
  • GC17P061121

Summaries for SNORA38B Gene

GeneCards Summary for SNORA38B Gene

SNORA38B (Small Nucleolar RNA, H/ACA Box 38B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA38B Gene

Genomics for SNORA38B Gene

Regulatory Elements for SNORA38B Gene

Genomic Location for SNORA38B Gene

Start:
67,740,669 bp from pter
End:
67,740,801 bp from pter
Size:
133 bases
Orientation:
Plus strand

Genomic View for SNORA38B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA38B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA38B Gene

Proteins for SNORA38B Gene

Post-translational modifications for SNORA38B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA38B Gene

Domains for SNORA38B Gene

Gene Families for SNORA38B Gene

HGNC:
  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA38B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA38B Gene

Function for SNORA38B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA38B Gene

Localization for SNORA38B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA38B Gene

Pathways for SNORA38B Gene

SuperPathways for SNORA38B Gene

No Data Available

Interacting Proteins for SNORA38B Gene

Gene Ontology (GO) - Biological Process for SNORA38B Gene

None

No data available for Pathways by source for SNORA38B Gene

Transcripts for SNORA38B Gene

mRNA/cDNA for SNORA38B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA38B

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA38B Gene

No ASD Table

Relevant External Links for SNORA38B Gene

GeneLoc Exon Structure for
SNORA38B
ECgene alternative splicing isoforms for
SNORA38B

Expression for SNORA38B Gene

mRNA expression in normal human tissues for SNORA38B Gene

SOURCE GeneReport for Unigene cluster for SNORA38B Gene Hs.693446

genes like me logo Genes that share expressions with SNORA38B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORA38B Gene

Orthologs for SNORA38B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA38B Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORA38 36
  • 85 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA38 36
  • 79 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23105 36
  • 81 (a)
ManyToMany
Gm24143 36
  • 74 (a)
ManyToMany
Gm25388 36
  • 69 (a)
ManyToMany
Gm25967 36
  • 69 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA38 36
  • 58 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORA38 36
  • 100 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA38 36
  • 71 (a)
ManyToMany
SNORA38 36
  • 72 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA38 36
  • 54 (a)
OneToMany
Species with no ortholog for SNORA38B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA38B Gene

ENSEMBL:
Gene Tree for SNORA38B (if available)
TreeFam:
Gene Tree for SNORA38B (if available)

Paralogs for SNORA38B Gene

No data available for Paralogs for SNORA38B Gene

Variants for SNORA38B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA38B Gene

Variant ID Type Subtype PubMed ID
nsv511059 CNV Complex 20534489

Relevant External Links for SNORA38B Gene

HapMap Linkage Disequilibrium report
SNORA38B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORA38B Gene

Disorders for SNORA38B Gene

No disorders were found for SNORA38B Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORA38B Gene

Publications for SNORA38B Gene

  1. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA38B Gene

Sources for SNORA38B Gene

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