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Aliases for SNORA38 Gene

Subcategory (RNA class) for SNORA38 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORA38 Gene

  • Small Nucleolar RNA, H/ACA Box 38 2 3 5
  • ACA38 SnoRNA 3
  • ACA38 3

External Ids for SNORA38 Gene

Previous GeneCards Identifiers for SNORA38 Gene

  • GC06P031702
  • GC06P031703
  • GC06P031590
  • GC06P031377
  • GC06P031635
  • GC06P031665
  • GC06P031712
  • GC06P031780
  • GC06P031814
  • GC06P031884

Summaries for SNORA38 Gene

GeneCards Summary for SNORA38 Gene

SNORA38 (Small Nucleolar RNA, H/ACA Box 38) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNORA38 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA38 Gene

Genomics for SNORA38 Gene

Regulatory Elements for SNORA38 Gene

Enhancers for SNORA38 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H030678 1.9 FANTOM5 ENCODE dbSUPER 14.6 -937.8 -937754 13 MLX DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC MEF2D PPP1R10 MDC1 IER3 NRM TRIM39 RPL7P4 DHX16 ABCF1 HLA-E PPP1R18
GH06H031353 1.7 FANTOM5 Ensembl ENCODE dbSUPER 14.6 -266.9 -266888 6 HDGF PKNOX1 ATF1 NSD2 ZNF2 GLIS2 ZNF143 ZNF207 FOS RUNX3 HLA-C HLA-B DDX39B ENSG00000271581 MICA LY6G5B ATF6B RPL7P4 MICA-AS1 SKIV2L
GH06H032184 1.7 Ensembl ENCODE dbSUPER 14.6 +568.2 568201 13 MLX YBX1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 HLA-DRB1 ATF6B AGER RNF5 LSM2 NOTCH4 STK19B DDX39B BRD2 C4A
GH06H030715 1.5 ENCODE dbSUPER 14.6 -903.6 -903553 7 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC MDC1 LY6G5B TRIM39 DDX39B DHX16 ABCF1 PPP1R10 ZNRD1 NRM HCG18
GH06H031619 1.4 ENCODE dbSUPER 15.3 -1.9 -1852 4 ZFP64 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC MEF2D SSRP1 ZNF610 LSM2 ATF6B GTF2H4 LY6G5B MDC1 PPT2 DDX39B EGFL8 NFKBIL1 DXO
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA38 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA38 Gene

Chromosome:
6
Start:
31,623,079 bp from pter
End:
31,623,210 bp from pter
Size:
132 bases
Orientation:
Plus strand

Genomic View for SNORA38 Gene

Genes around SNORA38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SNORA38 Gene

Post-translational modifications for SNORA38 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA38 Gene

Domains & Families for SNORA38 Gene

Gene Families for SNORA38 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA38: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA38 Gene

Function for SNORA38 Gene

Phenotypes From GWAS Catalog for SNORA38 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA38
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA38 Gene

Localization for SNORA38 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA38 Gene

Pathways & Interactions for SNORA38 Gene

SuperPathways for SNORA38 Gene

No Data Available

Interacting Proteins for SNORA38 Gene

Gene Ontology (GO) - Biological Process for SNORA38 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA38 Gene

Drugs & Compounds for SNORA38 Gene

No Compound Related Data Available

Transcripts for SNORA38 Gene

mRNA/cDNA for SNORA38 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA38
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA38 Gene

No ASD Table

Relevant External Links for SNORA38 Gene

GeneLoc Exon Structure for
SNORA38
ECgene alternative splicing isoforms for
SNORA38

Expression for SNORA38 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA38 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA38 Gene:

SNORA38

SOURCE GeneReport for Unigene cluster for SNORA38 Gene:

Hs.689700
genes like me logo Genes that share expression patterns with SNORA38: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA38 Gene

Orthologs for SNORA38 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA38 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA38 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA38 34
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA38 34
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23442 34
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA38 34
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA38 34
  • 55 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA38 34 34
  • 72 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA38 34
  • 55 (a)
OneToMany
Species where no ortholog for SNORA38 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA38 Gene

ENSEMBL:
Gene Tree for SNORA38 (if available)
TreeFam:
Gene Tree for SNORA38 (if available)

Paralogs for SNORA38 Gene

No data available for Paralogs for SNORA38 Gene

Variants for SNORA38 Gene

Sequence variations from dbSNP and Humsavar for SNORA38 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000514817 -- 31,623,675(+) TAGGA(A/G)GCCAT intron-variant, downstream-variant-500B
rs1002931472 -- 31,621,859(+) GAAAC(A/G)CTGGT intron-variant, upstream-variant-2KB
rs1004077611 -- 31,621,311(+) GCCCC(G/T)CTTCG intron-variant, upstream-variant-2KB
rs1004273160 -- 31,621,651(+) ACATC(C/T)ATCTT intron-variant, upstream-variant-2KB
rs1006163066 -- 31,622,655(+) ATGCA(A/G)TGGAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA38 Gene

Variant ID Type Subtype PubMed ID
dgv10403n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv1161370 CNV deletion 26073780
nsv462871 CNV loss 19166990
nsv601942 CNV loss 21841781
nsv830627 CNV loss 17160897

Relevant External Links for SNORA38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA38

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA38 Gene

Disorders for SNORA38 Gene

Relevant External Links for SNORA38

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA38

No disorders were found for SNORA38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA38 Gene

Publications for SNORA38 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 60
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 60
  3. Genome-wide association study of atypical psychosis. (PMID: 24132900) Kanazawa T … Yoneda H (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2013) 3 60
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORA38 Gene

Sources for SNORA38 Gene

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