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Aliases for SNORA38 Gene

Subcategory (RNA class) for SNORA38 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SNORA38 Gene

  • Small Nucleolar RNA, H/ACA Box 38 2 3 5
  • ACA38 SnoRNA 3
  • ACA38 3

External Ids for SNORA38 Gene

Previous GeneCards Identifiers for SNORA38 Gene

  • GC06P031702
  • GC06P031703
  • GC06P031590
  • GC06P031377
  • GC06P031635
  • GC06P031665
  • GC06P031712
  • GC06P031780

Summaries for SNORA38 Gene

GeneCards Summary for SNORA38 Gene

SNORA38 (Small Nucleolar RNA, H/ACA Box 38) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA38 Gene

Genomics for SNORA38 Gene

Regulatory Elements for SNORA38 Gene

Enhancers for SNORA38 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F031619 1.2 ENCODE 16.9 -1.9 -1852 4.0 CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 ZNF143 ZNF263 SP3 NFYC DDX39B LSM2 LY6G5B ATF6B PPT2 NFKBIL1 EGFL8 GTF2H4 BAG6 DHX16
GH06F031650 0.5 ENCODE 16.4 +29.4 29387 3.3 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 DHX16 LY6G5B BAG6 DDX39B LY6G5C ATF6B LSM2 MICA PPT2 NFKBIL1
GH06F031713 1 Ensembl ENCODE 16.3 +91.1 91084 1.1 KLF17 SIN3A ZNF48 GLIS2 KLF7 EGR2 SMARCA5 ZNF263 ZNF680 ZNF645 SNORA38 ENSG00000233902 DXO AGER ENSG00000204422 LY6G6D
GH06F031389 0.2 Ensembl 16.2 -233.8 -233779 0.2 HDGF ATF1 INSM2 KLF17 ZNF2 ZNF335 GLIS2 ZNF143 ZNF207 ZNF391 LOC101929072 RPL7P4 ENSG00000233902 SNORA38 TMPOP1 GC06P031392 GC06M031398
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA38 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA38 Gene

31,623,079 bp from pter
31,623,210 bp from pter
132 bases
Plus strand

Genomic View for SNORA38 Gene

Genes around SNORA38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SNORA38 Gene

Post-translational modifications for SNORA38 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA38 Gene

Domains & Families for SNORA38 Gene

Gene Families for SNORA38 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA38: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA38 Gene

Function for SNORA38 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA38 Gene

Localization for SNORA38 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA38 Gene

Pathways & Interactions for SNORA38 Gene

SuperPathways for SNORA38 Gene

No Data Available

Interacting Proteins for SNORA38 Gene

Gene Ontology (GO) - Biological Process for SNORA38 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA38 Gene

Transcripts for SNORA38 Gene

mRNA/cDNA for SNORA38 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA38 Gene

No ASD Table

Relevant External Links for SNORA38 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA38 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA38 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA38 Gene:


SOURCE GeneReport for Unigene cluster for SNORA38 Gene:

genes like me logo Genes that share expression patterns with SNORA38: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA38 Gene

Orthologs for SNORA38 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA38 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA38 35
  • 100 (a)
(Bos Taurus)
Mammalia SNORA38 35
  • 89 (a)
(Canis familiaris)
Mammalia SNORA38 35
  • 84 (a)
(Mus musculus)
Mammalia Gm23442 35
  • 81 (a)
(Monodelphis domestica)
Mammalia SNORA38 35
  • 68 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA38 35
  • 55 (a)
(Anolis carolinensis)
Reptilia SNORA38 35 35
  • 72 (a)
(Danio rerio)
Actinopterygii SNORA38 35
  • 55 (a)
Species where no ortholog for SNORA38 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA38 Gene

Gene Tree for SNORA38 (if available)
Gene Tree for SNORA38 (if available)

Paralogs for SNORA38 Gene

No data available for Paralogs for SNORA38 Gene

Variants for SNORA38 Gene

Sequence variations from dbSNP and Humsavar for SNORA38 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10527169 -- 31,621,208(+) GCCCC(-/GTG)GTGGT intron-variant, upstream-variant-2KB
rs113215913 -- 31,622,902(+) CGCTG(C/G/T)TGAGA upstream-variant-2KB, splice-donor-variant
rs114373078 -- 31,621,600(+) CCTTC(A/G)TATAT intron-variant, upstream-variant-2KB
rs114469043 -- 31,621,088(+) CCCTA(A/G)CCACC intron-variant, upstream-variant-2KB
rs115229219 -- 31,622,898(+) AACCC(A/G)CTGGT upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for SNORA38 Gene

Variant ID Type Subtype PubMed ID
dgv10403n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv1161370 CNV deletion 26073780
nsv462871 CNV loss 19166990
nsv601942 CNV loss 21841781
nsv830627 CNV loss 17160897

Relevant External Links for SNORA38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA38 Gene

Disorders for SNORA38 Gene

Relevant External Links for SNORA38

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORA38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA38 Gene

Publications for SNORA38 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Genome-wide association study of atypical psychosis. (PMID: 24132900) Kanazawa T. … Yoneda H. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2013) 3 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA38 Gene

Sources for SNORA38 Gene

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