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Aliases for SNORA33 Gene

Subcategory (RNA class) for SNORA33 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA33 Gene

  • Small Nucleolar RNA, H/ACA Box 33 2 3 5
  • ACA33 Small Nucleolar RNA 3
  • ACA33 SnoRNA 3
  • ACA33 3

External Ids for SNORA33 Gene

Previous GeneCards Identifiers for SNORA33 Gene

  • GC06P133184
  • GC06P130713

Summaries for SNORA33 Gene

GeneCards Summary for SNORA33 Gene

SNORA33 (Small Nucleolar RNA, H/ACA Box 33) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA33 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA33 Gene

Genomics for SNORA33 Gene

Regulatory Elements for SNORA33 Gene

Enhancers for SNORA33 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H132812 1.5 FANTOM5 ENCODE 19.6 -2.6 -2639 4 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 MEF2D SSRP1 ZNF610 RPS12 SLC18B1 SNORA33 VNN1 GC06P132818
GH06H132510 1.7 FANTOM5 ENCODE dbSUPER 12.2 -304.5 -304463 4 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 MED23 STX7 SNORA33 LOC100421775 ENPP1 VNN2 VNN1 MOXD1
GH06H132797 1.1 ENCODE 10.9 -18.5 -18470 2 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 SP3 SP5 SLC18B1 SNORA33 VNN2 GC06M132772
GH06H132669 1 Ensembl ENCODE 11.3 -145.3 -145280 4 CTCF FOXA2 MAX RAD21 ZNF366 HNF4G SMC3 ZNF143 ZNF654 L3MBTL2 ENSG00000234484 VNN2 VNN3 SNORA33 RPS12 SNORD100 SNORD101 SLC18B1 VNN1 HLFP1
GH06H133130 1 Ensembl ENCODE 10.9 +314.6 314622 3 JUN MAX ZNF384 RAD21 ZNF7 ZFHX2 RCOR1 FOS ZNF548 EGR2 SNORA33 VNN3 MTCYBP4 LINC00326
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA33 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA33 Gene

Chromosome:
6
Start:
132,817,219 bp from pter
End:
132,817,351 bp from pter
Size:
133 bases
Orientation:
Plus strand

Genomic View for SNORA33 Gene

Genes around SNORA33 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA33 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA33 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA33 Gene

Proteins for SNORA33 Gene

Post-translational modifications for SNORA33 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA33 Gene

Domains & Families for SNORA33 Gene

Gene Families for SNORA33 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA33: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA33 Gene

Function for SNORA33 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA33
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA33 Gene

Localization for SNORA33 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA33 Gene

Pathways & Interactions for SNORA33 Gene

SuperPathways for SNORA33 Gene

No Data Available

Interacting Proteins for SNORA33 Gene

Gene Ontology (GO) - Biological Process for SNORA33 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA33 Gene

Drugs & Compounds for SNORA33 Gene

No Compound Related Data Available

Transcripts for SNORA33 Gene

mRNA/cDNA for SNORA33 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA33 Gene

Small nucleolar RNA, H/ACA box 33:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA33
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA33 Gene

No ASD Table

Relevant External Links for SNORA33 Gene

GeneLoc Exon Structure for
SNORA33
ECgene alternative splicing isoforms for
SNORA33

Expression for SNORA33 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA33 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA33 Gene:

SNORA33

SOURCE GeneReport for Unigene cluster for SNORA33 Gene:

Hs.671378
genes like me logo Genes that share expression patterns with SNORA33: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA33 Gene

Orthologs for SNORA33 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA33 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA33 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA33 34
  • 86 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA33 34
  • 86 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Snora33 34
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA33 34
  • 70 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA33 34
  • 61 (a)
OneToMany
Species where no ortholog for SNORA33 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA33 Gene

ENSEMBL:
Gene Tree for SNORA33 (if available)
TreeFam:
Gene Tree for SNORA33 (if available)

Paralogs for SNORA33 Gene

No data available for Paralogs for SNORA33 Gene

Variants for SNORA33 Gene

Sequence variations from dbSNP and Humsavar for SNORA33 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1003704262 -- 132,817,514(+) TGTCA(C/T)TGAAG downstream-variant-500B, reference, missense
rs1004662688 -- 132,816,307(+) GTTCT(C/T)CAGAC intron-variant, upstream-variant-2KB
rs1005713289 -- 132,815,542(+) AATAG(C/T)TGTGA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1005715320 -- 132,816,953(+) TTCTC(A/C)CAATA intron-variant, upstream-variant-2KB
rs1008170858 -- 132,815,757(+) CCTAG(G/T)ATGAG intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA33 Gene

Variant ID Type Subtype PubMed ID
dgv1830e212 CNV loss 25503493
nsv970167 CNV duplication 23825009

Relevant External Links for SNORA33 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA33 Gene

Disorders for SNORA33 Gene

Relevant External Links for SNORA33

Genetic Association Database (GAD)
SNORA33
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA33

No disorders were found for SNORA33 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA33 Gene

Publications for SNORA33 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 60
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 60
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 60
  4. A genome-wide association study for diabetic nephropathy genes in African Americans. (PMID: 21150874) McDonough CW … Bowden DW (Kidney international 2011) 45 60
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORA33 Gene

Sources for SNORA33 Gene

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