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Aliases for SNORA29 Gene

Subcategory (RNA class) for SNORA29 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA29 Gene

  • Small Nucleolar RNA, H/ACA Box 29 2 3 5
  • ACA29 SnoRNA 3
  • ACA29 3

External Ids for SNORA29 Gene

Previous GeneCards Identifiers for SNORA29 Gene

  • GC06M160126
  • GC06M160206

Summaries for SNORA29 Gene

GeneCards Summary for SNORA29 Gene

SNORA29 (Small Nucleolar RNA, H/ACA Box 29) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA29 Gene

Genomics for SNORA29 Gene

Regulatory Elements for SNORA29 Gene

Enhancers for SNORA29 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F159679 1.3 Ensembl ENCODE 10.8 +105.6 105590 1.2 HDGF ATF1 PKNOX1 ARNT CREB3L1 YY1 ZNF766 GATA2 CBX5 FOS MRPL18 SNORA29 TCP1 WTAP PNLDC1 GC06M159668 PIR54448 GC06M159698
GH06F159725 1.2 ENCODE 11.5 +57.5 57469 5.4 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MRPL18 PNLDC1 IGF2R ACAT2 SOD2 SNORA29 TCP1 SNORA20 LOC729603 WTAP
GH06F159699 1.2 Ensembl ENCODE 10.6 +84.7 84749 3.5 YY1 FOS SP3 REST TSHZ1 ZNF518A ZNF623 SMARCA4 MYNN STAT3 MRPL18 WTAP PNLDC1 SOD2 ACAT2 SNORA29 TCP1 GC06M159698 GC06M159668 PIR54448
GH06F159690 1.1 ENCODE 11.2 +92.3 92334 5.8 HDGF PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 MRPL18 WTAP PNLDC1 SOD2 ACAT2 SNORA29 TCP1 SNORA20 ENSG00000237927 GC06M159698
GH06F159805 1.1 Ensembl ENCODE 10.6 -20.8 -20835 2.8 HDAC1 FEZF1 GATA4 ZNF366 SCRT2 FOS THAP11 JUNB CEBPB ZNF843 MRPL18 SNORA29 SNORA20 ACAT2 PNLDC1 GC06P159828 PIR41853
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA29 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA29 Gene

Chromosome:
6
Start:
159,785,594 bp from pter
End:
159,785,733 bp from pter
Size:
140 bases
Orientation:
Minus strand

Genomic View for SNORA29 Gene

Genes around SNORA29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA29 Gene

Proteins for SNORA29 Gene

Post-translational modifications for SNORA29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA29 Gene

Domains & Families for SNORA29 Gene

Gene Families for SNORA29 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA29: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA29 Gene

Function for SNORA29 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA29 Gene

Localization for SNORA29 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA29 Gene

Pathways & Interactions for SNORA29 Gene

SuperPathways for SNORA29 Gene

No Data Available

Interacting Proteins for SNORA29 Gene

Gene Ontology (GO) - Biological Process for SNORA29 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA29 Gene

Transcripts for SNORA29 Gene

mRNA/cDNA for SNORA29 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA29 Gene

No ASD Table

Relevant External Links for SNORA29 Gene

GeneLoc Exon Structure for
SNORA29
ECgene alternative splicing isoforms for
SNORA29

Expression for SNORA29 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA29 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA29 Gene:

SNORA29
genes like me logo Genes that share expression patterns with SNORA29: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA29 Gene

Orthologs for SNORA29 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA29 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA29 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA29 35
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA29 35
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26130 35
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA29 35
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA29 35
  • 72 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA29 35
  • 66 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA29 35 35
  • 65 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA29 35 35
  • 57 (a)
OneToMany
Species where no ortholog for SNORA29 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA29 Gene

ENSEMBL:
Gene Tree for SNORA29 (if available)
TreeFam:
Gene Tree for SNORA29 (if available)

Paralogs for SNORA29 Gene

No data available for Paralogs for SNORA29 Gene

Variants for SNORA29 Gene

Sequence variations from dbSNP and Humsavar for SNORA29 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111271076 -- 159,786,305(+) TCTTT(-/C)CTCTT intron-variant, upstream-variant-2KB
rs111856478 -- 159,785,187(+) GCGCG(A/C)AACAC intron-variant, downstream-variant-500B
rs115163656 -- 159,786,844(+) TTATA(C/T)TGTGT intron-variant, upstream-variant-2KB
rs115732424 -- 159,785,252(+) GGACT(A/G)GCACT intron-variant, downstream-variant-500B
rs117383602 -- 159,785,127(+) AAAAT(A/T)GGTTA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORA29 Gene

Variant ID Type Subtype PubMed ID
esv2759483 CNV gain 17122850
nsv5563 CNV insertion 18451855

Relevant External Links for SNORA29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA29 Gene

Disorders for SNORA29 Gene

Relevant External Links for SNORA29

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA29

No disorders were found for SNORA29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA29 Gene

Publications for SNORA29 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA29 Gene

Sources for SNORA29 Gene

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