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Aliases for SNORA28 Gene

Subcategory (RNA class) for SNORA28 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA28 Gene

  • Small Nucleolar RNA, H/ACA Box 28 2 3
  • ACA28 SnoRNA 3
  • ACA28 3

External Ids for SNORA28 Gene

Previous GeneCards Identifiers for SNORA28 Gene

  • GC14P102876
  • GC14P103804
  • GC14P083982

Summaries for SNORA28 Gene

GeneCards Summary for SNORA28 Gene

SNORA28 (Small Nucleolar RNA, H/ACA Box 28) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA28 Gene

Genomics for SNORA28 Gene

Regulatory Elements for SNORA28 Gene

Genomic Location for SNORA28 Gene

Start:
103,337,849 bp from pter
End:
103,337,974 bp from pter
Size:
126 bases
Orientation:
Plus strand

Genomic View for SNORA28 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA28 Gene

Proteins for SNORA28 Gene

Post-translational modifications for SNORA28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA28 Gene

Domains for SNORA28 Gene

Gene Families for SNORA28 Gene

HGNC:
  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA28: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA28 Gene

Function for SNORA28 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA28 Gene

Localization for SNORA28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA28 Gene

Pathways for SNORA28 Gene

SuperPathways for SNORA28 Gene

No Data Available

Interacting Proteins for SNORA28 Gene

Gene Ontology (GO) - Biological Process for SNORA28 Gene

None

No data available for Pathways by source for SNORA28 Gene

Transcripts for SNORA28 Gene

mRNA/cDNA for SNORA28 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA28 Gene

Small nucleolar RNA, H/ACA box 28:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA28 Gene

No ASD Table

Relevant External Links for SNORA28 Gene

GeneLoc Exon Structure for
SNORA28
ECgene alternative splicing isoforms for
SNORA28

Expression for SNORA28 Gene

mRNA expression in normal human tissues for SNORA28 Gene

SOURCE GeneReport for Unigene cluster for SNORA28 Gene Hs.658237

genes like me logo Genes that share expressions with SNORA28: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORA28 Gene

Orthologs for SNORA28 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA28 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA28 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA28 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA28 36
  • 74 (a)
OneToMany
SNORA28 36
  • 87 (a)
OneToMany
SNORA28 36
  • 89 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snora28 16
Snora28 36
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA28 36
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA28 36
  • 76 (a)
OneToMany
SNORA28 36
  • 79 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA28 36
  • 69 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA28 36
  • 72 (a)
OneToMany
SNORA28 36
  • 69 (a)
OneToMany
Species with no ortholog for SNORA28:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA28 Gene

ENSEMBL:
Gene Tree for SNORA28 (if available)
TreeFam:
Gene Tree for SNORA28 (if available)

Paralogs for SNORA28 Gene

No data available for Paralogs for SNORA28 Gene

Variants for SNORA28 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA28 Gene

Variant ID Type Subtype PubMed ID
nsv9168 CNV Loss 18304495
nsv902295 CNV Loss 21882294

Relevant External Links for SNORA28 Gene

HapMap Linkage Disequilibrium report
SNORA28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORA28 Gene

Disorders for SNORA28 Gene

No disorders were found for SNORA28 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA28 Gene

Publications for SNORA28 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA28 Gene

Sources for SNORA28 Gene

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