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Aliases for SNORA27 Gene

Subcategory (RNA class) for SNORA27 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA27 Gene

  • Small Nucleolar RNA, H/ACA Box 27 2 3 5
  • ACA27 Small Nucleolar RNA 3
  • ACA27 SnoRNA 3
  • ACA27 3

External Ids for SNORA27 Gene

Previous GeneCards Identifiers for SNORA27 Gene

  • GC13P026732
  • GC13P026734
  • GC13P027830
  • GC13P027831
  • GC13P027833
  • GC13P027837
  • GC13P027842
  • GC13P027256
  • GC13P027257

Summaries for SNORA27 Gene

GeneCards Summary for SNORA27 Gene

SNORA27 (Small Nucleolar RNA, H/ACA Box 27) is an RNA Gene, and is affiliated with the snoRNA class. Among its related pathways are Viral mRNA Translation.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA27 Gene

Genomics for SNORA27 Gene

Regulatory Elements for SNORA27 Gene

Enhancers for SNORA27 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SNORA27 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA27 Gene

Chromosome:
13
Start:
27,255,401 bp from pter
End:
27,255,526 bp from pter
Size:
126 bases
Orientation:
Plus strand

Genomic View for SNORA27 Gene

Genes around SNORA27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA27 Gene

Proteins for SNORA27 Gene

Post-translational modifications for SNORA27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA27 Gene

Domains & Families for SNORA27 Gene

Gene Families for SNORA27 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA27: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA27 Gene

Function for SNORA27 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA27 Gene

Localization for SNORA27 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA27 Gene

Pathways & Interactions for SNORA27 Gene

SuperPathways for SNORA27 Gene

Superpath Contained pathways
1 Viral mRNA Translation
genes like me logo Genes that share pathways with SNORA27: view

Pathways by source for SNORA27 Gene

1 BioSystems pathway for SNORA27 Gene

Interacting Proteins for SNORA27 Gene

Gene Ontology (GO) - Biological Process for SNORA27 Gene

None

No data available for SIGNOR curated interactions for SNORA27 Gene

Drugs & Compounds for SNORA27 Gene

No Compound Related Data Available

Transcripts for SNORA27 Gene

mRNA/cDNA for SNORA27 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA27 Gene

No ASD Table

Relevant External Links for SNORA27 Gene

GeneLoc Exon Structure for
SNORA27
ECgene alternative splicing isoforms for
SNORA27

Expression for SNORA27 Gene

mRNA expression in normal human tissues for SNORA27 Gene

SOURCE GeneReport for Unigene cluster for SNORA27 Gene Hs.689719

genes like me logo Genes that share expression patterns with SNORA27: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORA27 Gene

Orthologs for SNORA27 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA27 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORA27 36
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA27 36
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA27 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23202 36
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA27 36
  • 79 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SNORA27 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA27 36
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA27 36
  • 70 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA27 36
  • 56 (a)
OneToMany
Species with no ortholog for SNORA27:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA27 Gene

ENSEMBL:
Gene Tree for SNORA27 (if available)
TreeFam:
Gene Tree for SNORA27 (if available)

Paralogs for SNORA27 Gene

No data available for Paralogs for SNORA27 Gene

Variants for SNORA27 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for SNORA27 Gene

Disorders for SNORA27 Gene

Relevant External Links for SNORA27

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA27

No disorders were found for SNORA27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA27 Gene

Publications for SNORA27 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 67
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 3

Products for SNORA27 Gene

Sources for SNORA27 Gene

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