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Aliases for SNORA27 Gene

Subcategory (RNA class) for SNORA27 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA27 Gene

  • Small Nucleolar RNA, H/ACA Box 27 2 3 5
  • ACA27 Small Nucleolar RNA 3
  • ACA27 SnoRNA 3
  • ACA27 3

External Ids for SNORA27 Gene

Previous GeneCards Identifiers for SNORA27 Gene

  • GC13P026732
  • GC13P026734
  • GC13P027830
  • GC13P027831
  • GC13P027833
  • GC13P027837
  • GC13P027842
  • GC13P027256
  • GC13P027257
  • GC13P027258
  • GC13P027259

Summaries for SNORA27 Gene

GeneCards Summary for SNORA27 Gene

SNORA27 (Small Nucleolar RNA, H/ACA Box 27) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA27 Gene

Genomics for SNORA27 Gene

Regulatory Elements for SNORA27 Gene

Enhancers for SNORA27 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F026981 1.8 FANTOM5 Ensembl ENCODE 15.3 -271.8 -271751 4.3 PKNOX1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CBX5 SNORA27 MTIF3 RASL11A USP12 RPL21 ENSG00000283579 RPS21P8
GH13F027952 1.3 FANTOM5 ENCODE 14.7 +700.1 700068 6.0 HDGF ARNT GLI4 FEZF1 ZNF48 ZNF2 YY1 ZNF143 ZNF207 ZNF548 CDX2 PAN3 SNORA27 RPL21 PDX1-AS1 PDX1 GSX1 PAN3-AS1 RASL11A URAD
GH13F027167 1 ENCODE 16.4 -84.7 -84699 5.9 ATF1 ARID4B SIN3A FEZF1 DMAP1 ZNF48 YY1 GLIS2 ZNF207 ZNF143 SNORA27 RPL21 SNORD102 RASL11A LINC00412 USP12 USP12-AS1
GH13F027130 1.5 FANTOM5 Ensembl ENCODE 10.9 -122.3 -122301 6.6 TBP TBL1XR1 INSM2 BMI1 FEZF1 RARA YY1 CBX5 ZNF143 ETV6 USP12 USP12-AS2 RPL21 SNORA27 SNORD102 RASL11A LINC00412 USP12-AS1
GH13F027182 1.2 Ensembl ENCODE 11.2 -72.2 -72230 2.1 PKNOX1 ATF1 ARID4B SIN3A FEZF1 YY1 GATA2 FOS JUNB MBD2 USP12 LINC00412 RPL21 SNORA27 SNORD102 RASL11A MTIF3 USP12-AS2 PIR56248
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA27 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA27 Gene

Chromosome:
13
Start:
27,255,401 bp from pter
End:
27,255,526 bp from pter
Size:
126 bases
Orientation:
Plus strand

Genomic View for SNORA27 Gene

Genes around SNORA27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA27 Gene

Proteins for SNORA27 Gene

Post-translational modifications for SNORA27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA27 Gene

Domains & Families for SNORA27 Gene

Gene Families for SNORA27 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA27: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA27 Gene

Function for SNORA27 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA27 Gene

Localization for SNORA27 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA27 Gene

Pathways & Interactions for SNORA27 Gene

SuperPathways for SNORA27 Gene

No Data Available

Interacting Proteins for SNORA27 Gene

Gene Ontology (GO) - Biological Process for SNORA27 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA27 Gene

Transcripts for SNORA27 Gene

mRNA/cDNA for SNORA27 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA27 Gene

No ASD Table

Relevant External Links for SNORA27 Gene

GeneLoc Exon Structure for
SNORA27
ECgene alternative splicing isoforms for
SNORA27

Expression for SNORA27 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA27 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA27 Gene:

SNORA27

SOURCE GeneReport for Unigene cluster for SNORA27 Gene:

Hs.689719
genes like me logo Genes that share expression patterns with SNORA27: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA27 Gene

Orthologs for SNORA27 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA27 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA27 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA27 35
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA27 35
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23202 35
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA27 35
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA27 35
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA27 35
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA27 35
  • 70 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA27 35
  • 56 (a)
OneToMany
Species where no ortholog for SNORA27 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA27 Gene

ENSEMBL:
Gene Tree for SNORA27 (if available)
TreeFam:
Gene Tree for SNORA27 (if available)

Paralogs for SNORA27 Gene

No data available for Paralogs for SNORA27 Gene

Variants for SNORA27 Gene

Sequence variations from dbSNP and Humsavar for SNORA27 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs587777527 Pathogenic 27,254,247(+) TATGC(A/G)AATCT upstream-variant-2KB, reference, missense
rs10467685 -- 27,253,904(+) GTTCA(A/G)CATGT intron-variant, upstream-variant-2KB
rs10467686 -- 27,254,823(+) gccTA(A/G)AATGG intron-variant, upstream-variant-2KB
rs111462631 -- 27,255,962(+) AGACC(A/G)TCATC intron-variant, downstream-variant-500B
rs111616110 -- 27,254,588(+) GTGGT(G/T)TCTCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA27 Gene

Variant ID Type Subtype PubMed ID
nsv976098 CNV duplication 23825009

Relevant External Links for SNORA27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA27 Gene

Disorders for SNORA27 Gene

Relevant External Links for SNORA27

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA27

No disorders were found for SNORA27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA27 Gene

Publications for SNORA27 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 3 64

Products for SNORA27 Gene

Sources for SNORA27 Gene

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