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Aliases for SNORA25B Gene

Subcategory (RNA class) for SNORA25B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA25B Gene

  • Small Nucleolar RNA, H/ACA Box 25B 2 3 5

External Ids for SNORA25B Gene

ORGUL Members for SNORA25B Gene

Previous GeneCards Identifiers for SNORA25B Gene

  • GC00U936756
  • GC07U904619

Summaries for SNORA25B Gene

GeneCards Summary for SNORA25B Gene

SNORA25B (Small Nucleolar RNA, H/ACA Box 25B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA25B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA25B Gene

Genomics for SNORA25B Gene

Regulatory Elements for SNORA25B Gene

Enhancers for SNORA25B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H115622 1.4 VISTA 0.3 -42.3 -42264 2 ZNF316 LOC100506489 GC07P115639 SNORA25B GC07M115583
GH07H115526 0.5 ENCODE 0.2 +55.0 54961 0 POLR2A POU5F1 ETS1 ENSG00000244565 SNORA25B GC07M115583
GH07H115561 0.2 ENCODE 0.4 +20.0 19968 0 SNORA25B GC07M115583 ENSG00000244565
GH07H115618 0.2 ENCODE 0.3 -37.4 -37440 0 GC07P115639 GC07M115583 SNORA25B
GH07H115505 0.2 Ensembl 0.2 +76.1 76087 0 ENSG00000244565 SNORA25B GC07M115583
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA25B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA25B Gene

Chromosome:
7
Start:
115,581,315 bp from pter
End:
115,581,442 bp from pter
Size:
128 bases
Orientation:
Minus strand

Genomic View for SNORA25B Gene

Genes around SNORA25B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA25B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA25B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SNORA25B Gene

Proteins for SNORA25B Gene

Post-translational modifications for SNORA25B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA25B Gene

Domains & Families for SNORA25B Gene

Gene Families for SNORA25B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA25B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA25B Gene

Function for SNORA25B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA25B Gene

Localization for SNORA25B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA25B Gene

Pathways & Interactions for SNORA25B Gene

SuperPathways for SNORA25B Gene

No Data Available

Interacting Proteins for SNORA25B Gene

Gene Ontology (GO) - Biological Process for SNORA25B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA25B Gene

Drugs & Compounds for SNORA25B Gene

No Compound Related Data Available

Transcripts for SNORA25B Gene

mRNA/cDNA for SNORA25B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA25B Gene

No ASD Table

Relevant External Links for SNORA25B Gene

GeneLoc Exon Structure for
SNORA25B
ECgene alternative splicing isoforms for
SNORA25B

Expression for SNORA25B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA25B Gene

Orthologs for SNORA25B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA25B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA25 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA25 34
  • 81 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia SNORA25 34
  • 69 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA25 34
  • 65 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23584 34
  • 60 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA25 34
  • 61 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA25 34
  • 63 (a)
OneToMany
Species where no ortholog for SNORA25B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA25B Gene

ENSEMBL:
Gene Tree for SNORA25B (if available)
TreeFam:
Gene Tree for SNORA25B (if available)

Paralogs for SNORA25B Gene

No data available for Paralogs for SNORA25B Gene

Variants for SNORA25B Gene

Relevant External Links for SNORA25B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA25B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA25B Gene

Disorders for SNORA25B Gene

Relevant External Links for SNORA25B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA25B

No disorders were found for SNORA25B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA25B Gene

Publications for SNORA25B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 60

Products for SNORA25B Gene

Sources for SNORA25B Gene

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