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Aliases for SNORA25 Gene

Subcategory (RNA class) for SNORA25 Gene

snoRNA

Quality Score for this RNA gene is

21

Aliases for SNORA25 Gene

  • Small Nucleolar RNA, H/ACA Box 25 2 3
  • ACA25 3

External Ids for SNORA25 Gene

Summaries for SNORA25 Gene

GeneCards Summary for SNORA25 Gene

SNORA25 (Small Nucleolar RNA, H/ACA Box 25) is a RNA Gene, and belongs to snoRNA RNA class.

fRNAdb sequence ontologies for SNORA25 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA25: ACA25 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].

View fRNAdb secondary structures for SNORA25

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA25 Gene

Genomics for SNORA25 Gene

Genomic Location for SNORA25 Gene

Start:
93,730,513 bp from pter
End:
93,730,646 bp from pter
Size:
134 bases
Orientation:
Minus strand

Genomic View for SNORA25 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA25 Gene

Regulatory Elements for SNORA25 Gene

ORGUL Member Location for SNORA25 Gene

ORGUL Member Location for SNORA25 gene

Proteins for SNORA25 Gene

Post-translational modifications for SNORA25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA25 Gene

Domains for SNORA25 Gene

Gene Families for SNORA25 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORA25: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORA25 Gene

Function for SNORA25 Gene

miRNA for SNORA25 Gene

miRTarBase miRNAs that target SNORA25

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for SNORA25 Gene

Localization for SNORA25 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SNORA25 Gene COMPARTMENTS Subcellular localization image for SNORA25 gene
Compartment Confidence
nucleus 5
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for SNORA25 Gene

Pathways for SNORA25 Gene

SuperPathways for SNORA25 Gene

No Data Available

Interacting Proteins for SNORA25 Gene

Gene Ontology (GO) - Biological Process for SNORA25 Gene

None

No data available for Pathways by source for SNORA25 Gene

Transcripts for SNORA25 Gene

fRNAdb Secondary structures for SNORA25 Gene

  • RF00402;SNORA25;ADDF010742113.1/30-159

mRNA/cDNA for SNORA25 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA25 Gene

No ASD Table

Relevant External Links for SNORA25 Gene

GeneLoc Exon Structure for
SNORA25
ECgene alternative splicing isoforms for
SNORA25

Expression for SNORA25 Gene

mRNA expression in normal human tissues for SNORA25 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for SNORA25 Gene Hs.738736

genes like me logo Genes that share expressions with SNORA25: view

Orthologs for SNORA25 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA25 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA25 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA25 37
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA25 37
  • 82 (a)
OneToMany
SNORA25 37
  • 81 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm22579 37
  • 75 (a)
OneToMany
Gm22743 37
  • 74 (a)
OneToMany
Gm22765 37
  • 67 (a)
OneToMany
Gm24095 37
  • 74 (a)
OneToMany
Gm24539 37
  • 75 (a)
OneToMany
Gm24945 37
  • 61 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA25 37
  • 69 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA25 37
  • 67 (a)
OneToMany
SNORA25 37
  • 67 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA25 37
  • 64 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA25 37
  • 65 (a)
OneToMany
Species with no ortholog for SNORA25:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA25 Gene

ENSEMBL:
Gene Tree for SNORA25 (if available)
TreeFam:
Gene Tree for SNORA25 (if available)

Paralogs for SNORA25 Gene

No data available for Paralogs for SNORA25 Gene

Variants for SNORA25 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA25 Gene

Variant ID Type Subtype PubMed ID
nsv898173 CNV Loss 21882294
nsv898181 CNV Gain 21882294
nsv898182 CNV Gain 21882294
nsv832232 CNV Gain 17160897

Relevant External Links for SNORA25 Gene

HapMap Linkage Disequilibrium report
SNORA25

No data available for Sequence variations from dbSNP and Humsavar for SNORA25 Gene

Disorders for SNORA25 Gene

No disorders were found for SNORA25 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA25 Gene

Publications for SNORA25 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA25 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA25
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA25
    • Block miRNA regulation of SNORA25 using miScript Target Protectors

    Sources for SNORA25 Gene

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