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Aliases for SNORA21B Gene

Subcategory (RNA class) for SNORA21B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORA21B Gene

  • Small Nucleolar RNA, H/ACA Box 21B 2 3 5

External Ids for SNORA21B Gene

Previous GeneCards Identifiers for SNORA21B Gene

  • GC00U936733
  • GC17U902679

Summaries for SNORA21B Gene

GeneCards Summary for SNORA21B Gene

SNORA21B (Small Nucleolar RNA, H/ACA Box 21B) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNORA21B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA21B Gene

Genomics for SNORA21B Gene

Regulatory Elements for SNORA21B Gene

Enhancers for SNORA21B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H038867 1.8 FANTOM5 ENCODE dbSUPER 12.8 -20.0 -20045 9.2 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC SSRP1 MED1 CDK12 LOC105371762 SNORA21 RPL23 CWC25 PSMB3 LINC02079 SNORA21B C17orf98
GH17H038876 1.5 Ensembl ENCODE dbSUPER 13 -30.5 -30490 11.1 ARNT ZFP64 ARID4B FEZF1 GLI4 YY1 ETS1 GLIS2 RUNX3 SP5 SNORA21 MED1 RPL23 RPS20P35 SNORA21B C17orf98 CWC25 PSMB3 LASP1 PCGF2
GH17H038895 1.5 Ensembl ENCODE dbSUPER 12.5 -47.8 -47758 7.7 HDGF PKNOX1 ATF1 ARNT ZFP64 ARID4B SIN3A TCF12 ZNF121 ZNF766 SNORA21 MED1 LASP1 RPS20P35 RPL23 SNORA21B LOC105371762 CWC25 LINC00672 ENSG00000266588
GH17H038889 1.3 Ensembl ENCODE dbSUPER 12.2 -40.6 -40639 5 ZFP64 ZSCAN4 RAD21 TCF12 GATA2 EGR1 SCRT2 EGR2 NCOA1 REST LASP1 RPL23 RPS20P35 SNORA21 SNORA21B CWC25 PIP4K2B PSMB3 GC17M038893
GH17H039092 1.3 FANTOM5 Ensembl ENCODE 5.4 -243.2 -243171 5.6 CTCF ZFP64 ZNF140 ZNF266 MAX CEBPG RAD21 ZNF697 RARA ZFHX2 PLXDC1 LOC105371762 MED1 SNORD124 CDK12 SNORA21 MED24 STARD3 SNORA21B LRRC37A11P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA21B on UCSC Golden Path with GeneCards custom track

Promoters for SNORA21B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000093824 -1641 2201 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF766

Genomic Locations for SNORA21B Gene

Genomic Locations for SNORA21B Gene
chr17:38,851,524-38,851,659
(GRCh38/hg38)
Size:
136 bases
Orientation:
Minus strand
chr17:37,007,777-37,007,912
(GRCh37/hg19)

Genomic View for SNORA21B Gene

Genes around SNORA21B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA21B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA21B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SNORA21B Gene

Proteins for SNORA21B Gene

Post-translational modifications for SNORA21B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA21B Gene

Domains & Families for SNORA21B Gene

Gene Families for SNORA21B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA21B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA21B Gene

Function for SNORA21B Gene

Phenotypes From GWAS Catalog for SNORA21B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA21B Gene

Localization for SNORA21B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA21B Gene

Pathways & Interactions for SNORA21B Gene

SuperPathways for SNORA21B Gene

No Data Available

Interacting Proteins for SNORA21B Gene

Gene Ontology (GO) - Biological Process for SNORA21B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA21B Gene

Drugs & Compounds for SNORA21B Gene

No Compound Related Data Available

Transcripts for SNORA21B Gene

mRNA/cDNA for SNORA21B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA21B Gene

No ASD Table

Relevant External Links for SNORA21B Gene

GeneLoc Exon Structure for
SNORA21B
ECgene alternative splicing isoforms for
SNORA21B

Expression for SNORA21B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA21B Gene

Orthologs for SNORA21B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA21B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA21 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA21 34
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia SNORA21 34
  • 72 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA21 34
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA21 34
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA21 34
  • 62 (a)
ManyToMany
Species where no ortholog for SNORA21B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA21B Gene

ENSEMBL:
Gene Tree for SNORA21B (if available)
TreeFam:
Gene Tree for SNORA21B (if available)

Paralogs for SNORA21B Gene

No data available for Paralogs for SNORA21B Gene

Variants for SNORA21B Gene

Relevant External Links for SNORA21B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA21B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA21B Gene

Disorders for SNORA21B Gene

Relevant External Links for SNORA21B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA21B

No disorders were found for SNORA21B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA21B Gene

Publications for SNORA21B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 60

Products for SNORA21B Gene

Sources for SNORA21B Gene

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