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Aliases for SNORA21 Gene

Subcategory (RNA class) for SNORA21 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA21 Gene

  • Small Nucleolar RNA, H/ACA Box 21 2 3
  • ACA21 Small Nucleolar RNA 3
  • ACA21 SnoRNA 3
  • ACA21 3

External Ids for SNORA21 Gene

Previous GeneCards Identifiers for SNORA21 Gene

  • GC17M034266
  • GC17M037010
  • GC17M032804
  • GC17M037015
  • GC17M037024
  • GC17M037027

Summaries for SNORA21 Gene

GeneCards Summary for SNORA21 Gene

SNORA21 (Small Nucleolar RNA, H/ACA Box 21) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA21 Gene

Genomics for SNORA21 Gene

Regulatory Elements for SNORA21 Gene

Genomic Location for SNORA21 Gene

Start:
38,852,863 bp from pter
End:
38,852,995 bp from pter
Size:
133 bases
Orientation:
Minus strand

Genomic View for SNORA21 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA21 Gene

Proteins for SNORA21 Gene

Post-translational modifications for SNORA21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA21 Gene

Domains for SNORA21 Gene

Gene Families for SNORA21 Gene

HGNC:
  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA21: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA21 Gene

Function for SNORA21 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA21 Gene

Localization for SNORA21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA21 Gene

Pathways for SNORA21 Gene

SuperPathways for SNORA21 Gene

No Data Available

Interacting Proteins for SNORA21 Gene

Gene Ontology (GO) - Biological Process for SNORA21 Gene

None

No data available for Pathways by source for SNORA21 Gene

Transcripts for SNORA21 Gene

mRNA/cDNA for SNORA21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA21

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA21 Gene

No ASD Table

Relevant External Links for SNORA21 Gene

GeneLoc Exon Structure for
SNORA21
ECgene alternative splicing isoforms for
SNORA21

Expression for SNORA21 Gene

mRNA expression in normal human tissues for SNORA21 Gene

SOURCE GeneReport for Unigene cluster for SNORA21 Gene Hs.738742

genes like me logo Genes that share expressions with SNORA21: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORA21 Gene

Orthologs for SNORA21 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA21 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA21 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA21 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snora21 16
Snora21 36
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA21 36
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA21 36
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA21 36
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA21 36
  • 71 (a)
OneToMany
SNORA21 36
  • 59 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA21 36
  • 60 (a)
OneToMany
SNORA21 36
  • 59 (a)
OneToMany
Species with no ortholog for SNORA21:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA21 Gene

ENSEMBL:
Gene Tree for SNORA21 (if available)
TreeFam:
Gene Tree for SNORA21 (if available)

Paralogs for SNORA21 Gene

No data available for Paralogs for SNORA21 Gene

Variants for SNORA21 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA21 Gene

Variant ID Type Subtype PubMed ID
nsv833439 CNV Loss 17160897
nsv908199 CNV Loss 21882294

Relevant External Links for SNORA21 Gene

HapMap Linkage Disequilibrium report
SNORA21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORA21 Gene

Disorders for SNORA21 Gene

No disorders were found for SNORA21 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA21 Gene

Publications for SNORA21 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 2 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA21 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA21
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA21
    • Block miRNA regulation of SNORA21 using miScript Target Protectors

    Sources for SNORA21 Gene

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