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Aliases for SNORA21 Gene

Subcategory (RNA class) for SNORA21 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA21 Gene

  • Small Nucleolar RNA, H/ACA Box 21 2 3 5
  • ACA21 Small Nucleolar RNA 3
  • ACA21 SnoRNA 3
  • ACA21 3

External Ids for SNORA21 Gene

Previous GeneCards Identifiers for SNORA21 Gene

  • GC17M034266
  • GC17M037010
  • GC17M032804
  • GC17M037015
  • GC17M037024
  • GC17M037027

Summaries for SNORA21 Gene

GeneCards Summary for SNORA21 Gene

SNORA21 (Small Nucleolar RNA, H/ACA Box 21) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA21 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA21 Gene

Genomics for SNORA21 Gene

Regulatory Elements for SNORA21 Gene

Enhancers for SNORA21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H038867 1.8 FANTOM5 ENCODE dbSUPER 44.7 -18.7 -18709 9 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC SSRP1 MED1 CDK12 LOC105371762 SNORA21 RPL23 CWC25 PSMB3 LINC02079 SNORA21B C17orf98
GH17H038920 1.4 Ensembl ENCODE dbSUPER 55.4 -69.2 -69231 3 ZFP64 PAF1 ZNF202 ZNF654 ZC3H11A REST ZNF518A ZNF781 ZNF623 ZNF292 MED1 CDK12 SNORA21 LOC105371762 RPL23 FBXO47 C17orf98 CWC25 PIP4K2B RPL19
GH17H038823 1.2 ENCODE 55.4 +28.1 28058 2 MLX ZFP64 DMAP1 YY1 ZNF143 SP3 NFYC ZC3H11A ZNF610 RCOR2 MED1 CDK12 SNORA21 LOC105371762 RPL23 STARD3 RPL19 PIP4K2B CWC25 PSMB3
GH17H038745 1.5 ENCODE dbSUPER 44 +103.2 103222 8 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 ZC3H11A MED1 CDK12 LOC105371762 SNORA21 PCGF2 LOC105371763 CISD3 STARD3 RPL19 RPL23
GH17H038923 1.1 Ensembl ENCODE 55.4 -71.1 -71106 0 ARID4B RAD21 ZNF143 RCOR1 CREM THAP11 ZNF202 ZC3H11A CEBPB ZNF623 MED1 CDK12 SNORA21 LOC105371762 RPL23 FBXO47 C17orf98 PIP4K2B CWC25 RPL19
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA21 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA21 Gene

Chromosome:
17
Start:
38,852,863 bp from pter
End:
38,852,995 bp from pter
Size:
133 bases
Orientation:
Minus strand

Genomic View for SNORA21 Gene

Genes around SNORA21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA21 Gene

Proteins for SNORA21 Gene

Post-translational modifications for SNORA21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA21 Gene

Domains & Families for SNORA21 Gene

Gene Families for SNORA21 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA21: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA21 Gene

Function for SNORA21 Gene

Phenotypes From GWAS Catalog for SNORA21 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA21
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA21 Gene

Localization for SNORA21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA21 Gene

Pathways & Interactions for SNORA21 Gene

SuperPathways for SNORA21 Gene

No Data Available

Interacting Proteins for SNORA21 Gene

Gene Ontology (GO) - Biological Process for SNORA21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA21 Gene

Drugs & Compounds for SNORA21 Gene

No Compound Related Data Available

Transcripts for SNORA21 Gene

mRNA/cDNA for SNORA21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA21
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA21 Gene

No ASD Table

Relevant External Links for SNORA21 Gene

GeneLoc Exon Structure for
SNORA21
ECgene alternative splicing isoforms for
SNORA21

Expression for SNORA21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA21 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA21 Gene:

SNORA21

SOURCE GeneReport for Unigene cluster for SNORA21 Gene:

Hs.738742
genes like me logo Genes that share expression patterns with SNORA21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA21 Gene

Orthologs for SNORA21 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA21 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA21 34
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA21 34
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snora21 34
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA21 34
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA21 34
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA21 34
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA21 34 34
  • 71 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA21 34 34
  • 60 (a)
OneToMany
Species where no ortholog for SNORA21 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA21 Gene

ENSEMBL:
Gene Tree for SNORA21 (if available)
TreeFam:
Gene Tree for SNORA21 (if available)

Paralogs for SNORA21 Gene

No data available for Paralogs for SNORA21 Gene

Variants for SNORA21 Gene

Sequence variations from dbSNP and Humsavar for SNORA21 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000125424 -- 38,854,507(+) CCTTG(C/G)TCCCT upstream-variant-2KB
rs1000500603 -- 38,854,655(+) CAGCA(G/T)GTTCT upstream-variant-2KB
rs1004881934 -- 38,852,736(+) TCCTA(A/C)AAAAG intron-variant, downstream-variant-500B
rs1004963868 -- 38,852,461(+) CAATA(C/T)GAGCA intron-variant, downstream-variant-500B
rs1005967110 -- 38,853,540(+) GCCAC(C/T)TTCGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA21 Gene

Variant ID Type Subtype PubMed ID
nsv1146669 OTHER inversion 26484159
nsv833439 CNV loss 17160897

Relevant External Links for SNORA21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA21 Gene

Disorders for SNORA21 Gene

Relevant External Links for SNORA21

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA21

No disorders were found for SNORA21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA21 Gene

Publications for SNORA21 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 60
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 60
  3. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 2 3 60
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 60
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORA21 Gene

Sources for SNORA21 Gene

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