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Aliases for SNORA21 Gene

Subcategory (RNA class) for SNORA21 Gene


Quality Score for this RNA gene is


Aliases for SNORA21 Gene

  • Small Nucleolar RNA, H/ACA Box 21 2 3 5
  • ACA21 Small Nucleolar RNA 3
  • ACA21 SnoRNA 3
  • ACA21 3

External Ids for SNORA21 Gene

Previous GeneCards Identifiers for SNORA21 Gene

  • GC17M034266
  • GC17M037010
  • GC17M032804
  • GC17M037015
  • GC17M037024
  • GC17M037027

Summaries for SNORA21 Gene

GeneCards Summary for SNORA21 Gene

SNORA21 (Small Nucleolar RNA, H/ACA Box 21) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA21 Gene

Genomics for SNORA21 Gene

Regulatory Elements for SNORA21 Gene

Enhancers for SNORA21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F038823 1.2 ENCODE 44.4 +28.1 28058 3.0 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC MED1 ENSG00000266469 CDK12 ENSG00000275532 SNORA21 RPL23 ENSG00000275665 RPL19 PIP4K2B CWC25
GH17F038920 1.2 Ensembl ENCODE 44.3 -69.5 -69532 3.7 TBP ZFP64 ARID4B ZNF48 RAD21 ZNF143 CREM THAP11 ZNF202 PAF1 ENSG00000266469 MED1 ENSG00000275532 SNORA21 CDK12 ENSG00000275665 RPL23 FBXO47 C17orf98 CWC25
GH17F038867 1.6 FANTOM5 ENCODE 25.6 -18.7 -18709 9.2 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 CDK12 ENSG00000266469 MED1 ENSG00000275665 SNORA21 ENSG00000275532 CWC25 LINC02079 PSMB3 ENSG00000252699
GH17F038584 1.3 Ensembl ENCODE 30.3 +268.0 267982 1.7 ATF1 ZNF493 ARID4B GLI4 DMAP1 ZNF48 ZNF2 ZNF121 GLIS2 ZNF143 MED1 ENSG00000266469 RPL23 SNORA21 ENSG00000275532 CDK12 LINC02079 RPL19 ENSG00000274996 LOC105371761
GH17F039074 0.8 ENCODE 42.1 -221.1 -221078 0.1 ZFP64 ZNF223 ZNF140 ZNF266 ZNF514 ZNF101 ZNF664 ZFHX2 RBAK ZNF433 ENSG00000266469 ENSG00000275532 MED1 SNORA21 ENSG00000275665 CDK12 SNORD124 LOC100287808 RPL23 LOC100131347
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA21 on UCSC Golden Path with GeneCards custom track

Promoters for SNORA21 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for SNORA21 Gene

38,852,863 bp from pter
38,852,995 bp from pter
133 bases
Minus strand

Genomic View for SNORA21 Gene

Genes around SNORA21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA21 Gene

Proteins for SNORA21 Gene

Post-translational modifications for SNORA21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA21 Gene

Domains & Families for SNORA21 Gene

Gene Families for SNORA21 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA21: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA21 Gene

Function for SNORA21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA21 Gene

Localization for SNORA21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA21 Gene

Pathways & Interactions for SNORA21 Gene

SuperPathways for SNORA21 Gene

No Data Available

Interacting Proteins for SNORA21 Gene

Gene Ontology (GO) - Biological Process for SNORA21 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA21 Gene

Transcripts for SNORA21 Gene

mRNA/cDNA for SNORA21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA21 Gene

No ASD Table

Relevant External Links for SNORA21 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA21 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA21 Gene:


SOURCE GeneReport for Unigene cluster for SNORA21 Gene:

genes like me logo Genes that share expression patterns with SNORA21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA21 Gene

Orthologs for SNORA21 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA21 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA21 35
  • 100 (a)
(Bos Taurus)
Mammalia SNORA21 35
  • 87 (a)
(Canis familiaris)
Mammalia SNORA21 35
  • 86 (a)
(Mus musculus)
Mammalia Snora21 35
  • 85 (a)
(Monodelphis domestica)
Mammalia SNORA21 35
  • 74 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA21 35
  • 71 (a)
(Gallus gallus)
Aves SNORA21 35
  • 73 (a)
(Anolis carolinensis)
Reptilia SNORA21 35 35
  • 71 (a)
(Danio rerio)
Actinopterygii SNORA21 35 35
  • 60 (a)
Species where no ortholog for SNORA21 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA21 Gene

Gene Tree for SNORA21 (if available)
Gene Tree for SNORA21 (if available)

Paralogs for SNORA21 Gene

No data available for Paralogs for SNORA21 Gene

Variants for SNORA21 Gene

Sequence variations from dbSNP and Humsavar for SNORA21 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs112235635 -- 38,852,685(+) GTTCA(A/G)CCGTC downstream-variant-500B, reference, synonymous-codon
rs1124927 -- 38,853,877(+) GCCCT(C/G)TCTGC upstream-variant-2KB
rs112538197 -- 38,853,020(+) ACCTC(A/T)CCTGT upstream-variant-2KB, splice-donor-variant
rs112788272 -- 38,854,121(+) CTAAA(C/T)GGTTT upstream-variant-2KB
rs112844799 -- 38,852,880(+) ACCGA(C/T)TGAAG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA21 Gene

Variant ID Type Subtype PubMed ID
nsv833439 CNV loss 17160897
nsv1146669 OTHER inversion 26484159

Relevant External Links for SNORA21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA21 Gene

Disorders for SNORA21 Gene

Relevant External Links for SNORA21

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORA21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA21 Gene

Publications for SNORA21 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 2 3 64
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA21 Gene

Sources for SNORA21 Gene

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