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Aliases for SNORA20B Gene

Subcategory (RNA class) for SNORA20B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA20B Gene

  • Small Nucleolar RNA, H/ACA Box 20B 2 3 5

External Ids for SNORA20B Gene

ORGUL Members for SNORA20B Gene

Previous GeneCards Identifiers for SNORA20B Gene

  • GC00U936722
  • GC07U904710

Summaries for SNORA20B Gene

GeneCards Summary for SNORA20B Gene

SNORA20B (Small Nucleolar RNA, H/ACA Box 20B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA20B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA20B Gene

Genomics for SNORA20B Gene

Regulatory Elements for SNORA20B Gene

Enhancers for SNORA20B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H039333 0.4 ENCODE 0.7 -4.8 -4753 0 POU5F1 POU6F2 GC07M039330 SNORA20B LOC105375239
GH07H039310 0.2 ENCODE 0.4 +18.3 18268 0 POU6F2 GC07P039305 SNORA20B GC07M039330
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA20B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA20B Gene

Chromosome:
7
Start:
39,329,003 bp from pter
End:
39,329,134 bp from pter
Size:
132 bases
Orientation:
Minus strand

Genomic View for SNORA20B Gene

Genes around SNORA20B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA20B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA20B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SNORA20B Gene

Proteins for SNORA20B Gene

Post-translational modifications for SNORA20B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA20B Gene

Domains & Families for SNORA20B Gene

Gene Families for SNORA20B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA20B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA20B Gene

Function for SNORA20B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA20B Gene

Localization for SNORA20B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA20B Gene

Pathways & Interactions for SNORA20B Gene

SuperPathways for SNORA20B Gene

No Data Available

Interacting Proteins for SNORA20B Gene

Gene Ontology (GO) - Biological Process for SNORA20B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA20B Gene

Drugs & Compounds for SNORA20B Gene

No Compound Related Data Available

Transcripts for SNORA20B Gene

mRNA/cDNA for SNORA20B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA20B Gene

No ASD Table

Relevant External Links for SNORA20B Gene

GeneLoc Exon Structure for
SNORA20B
ECgene alternative splicing isoforms for
SNORA20B

Expression for SNORA20B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA20B Gene

Orthologs for SNORA20B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA20B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA20 34
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24615 34
  • 81 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA20 34 34 34
  • 79 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA20 34
  • 73 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA20 34
  • 63 (a)
OneToMany
Species where no ortholog for SNORA20B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA20B Gene

ENSEMBL:
Gene Tree for SNORA20B (if available)
TreeFam:
Gene Tree for SNORA20B (if available)

Paralogs for SNORA20B Gene

No data available for Paralogs for SNORA20B Gene

Variants for SNORA20B Gene

Relevant External Links for SNORA20B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA20B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA20B Gene

Disorders for SNORA20B Gene

Relevant External Links for SNORA20B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA20B

No disorders were found for SNORA20B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA20B Gene

Publications for SNORA20B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 60

Products for SNORA20B Gene

Sources for SNORA20B Gene

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