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Aliases for SNORA20 Gene

Subcategory (RNA class) for SNORA20 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA20 Gene

  • Small Nucleolar RNA, H/ACA Box 20 2 3 5
  • ACA20 SnoRNA 3
  • ACA20 3

External Ids for SNORA20 Gene

Previous GeneCards Identifiers for SNORA20 Gene

  • GC06M160121
  • GC06M160201
  • GC06M157671

Summaries for SNORA20 Gene

GeneCards Summary for SNORA20 Gene

SNORA20 (Small Nucleolar RNA, H/ACA Box 20) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA20 Gene

Genomics for SNORA20 Gene

Regulatory Elements for SNORA20 Gene

Enhancers for SNORA20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F159725 1.2 ENCODE 11.2 +52.1 52117 5.4 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MRPL18 PNLDC1 IGF2R ACAT2 SOD2 SNORA29 TCP1 SNORA20 LOC729603 WTAP
GH06F159690 1.1 ENCODE 10.9 +87.0 86982 5.8 HDGF PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 MRPL18 WTAP PNLDC1 SOD2 ACAT2 SNORA29 TCP1 SNORA20 ENSG00000237927 GC06M159698
GH06F159805 1.1 Ensembl ENCODE 10.4 -26.2 -26187 2.8 HDAC1 FEZF1 GATA4 ZNF366 SCRT2 FOS THAP11 JUNB CEBPB ZNF843 MRPL18 SNORA29 SNORA20 ACAT2 PNLDC1 GC06P159828 PIR41853
GH06F159819 0.9 Ensembl ENCODE 10.6 -40.2 -40220 2.4 CTCF PKNOX1 SAP130 BHLHE40 GABPB1 MAX MYC MGA MRPL18 PNLDC1 SNORA29 TCP1 SNORA20 ACAT2 SOD2 SLC22A1 IGF2R GC06P159828
GH06F159829 0.7 Ensembl ENCODE 11.1 -49.9 -49940 2.6 NFIL3 HLF REST MRPL18 PNLDC1 TCP1 SNORA29 SNORA20 ACAT2 ENSG00000237927 GC06P159828 PIR41853 GC06P159838
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA20 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA20 Gene

Chromosome:
6
Start:
159,780,250 bp from pter
End:
159,780,381 bp from pter
Size:
132 bases
Orientation:
Minus strand

Genomic View for SNORA20 Gene

Genes around SNORA20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA20 Gene

Proteins for SNORA20 Gene

Post-translational modifications for SNORA20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA20 Gene

Domains & Families for SNORA20 Gene

Gene Families for SNORA20 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA20: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA20 Gene

Function for SNORA20 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA20 Gene

Localization for SNORA20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA20 Gene

Pathways & Interactions for SNORA20 Gene

SuperPathways for SNORA20 Gene

No Data Available

Interacting Proteins for SNORA20 Gene

Gene Ontology (GO) - Biological Process for SNORA20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA20 Gene

Transcripts for SNORA20 Gene

mRNA/cDNA for SNORA20 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA20 Gene

Small nucleolar RNA, H/ACA box 20:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA20 Gene

No ASD Table

Relevant External Links for SNORA20 Gene

GeneLoc Exon Structure for
SNORA20
ECgene alternative splicing isoforms for
SNORA20

Expression for SNORA20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA20 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA20 Gene:

SNORA20

SOURCE GeneReport for Unigene cluster for SNORA20 Gene:

Hs.689705
genes like me logo Genes that share expression patterns with SNORA20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA20 Gene

Orthologs for SNORA20 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA20 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA20 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA20 35
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA20 35
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snora20 35
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA20 35
  • 77 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA20 35
  • 67 (a)
OneToMany
Species where no ortholog for SNORA20 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA20 Gene

ENSEMBL:
Gene Tree for SNORA20 (if available)
TreeFam:
Gene Tree for SNORA20 (if available)

Paralogs for SNORA20 Gene

No data available for Paralogs for SNORA20 Gene

Variants for SNORA20 Gene

Sequence variations from dbSNP and Humsavar for SNORA20 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111274982 -- 159,780,303(+) TTTAC(A/G)GTGGC intron-variant, nc-transcript-variant
rs111588478 -- 159,781,987(+) GATAA(A/T)AACAT intron-variant, upstream-variant-2KB
rs112878349 -- 159,781,986(+) AGATA(A/T)TAACA intron-variant, upstream-variant-2KB
rs113046770 -- 159,781,511(+) CTCAC(A/G)CCTGT intron-variant, upstream-variant-2KB
rs113655669 -- 159,780,412(+) GGTAT(-/A)AACTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA20 Gene

Variant ID Type Subtype PubMed ID
esv2759483 CNV gain 17122850
nsv5563 CNV insertion 18451855

Relevant External Links for SNORA20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA20 Gene

Disorders for SNORA20 Gene

Relevant External Links for SNORA20

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA20

No disorders were found for SNORA20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA20 Gene

Publications for SNORA20 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA20 Gene

Sources for SNORA20 Gene

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