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Aliases for SNORA1B Gene

Subcategory (RNA class) for SNORA1B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA1B Gene

  • Small Nucleolar RNA, H/ACA Box 1B 2 3 5

External Ids for SNORA1B Gene

ORGUL Members for SNORA1B Gene

Previous GeneCards Identifiers for SNORA1B Gene

  • GC00U936774
  • GC08U902741

Summaries for SNORA1B Gene

GeneCards Summary for SNORA1B Gene

SNORA1B (Small Nucleolar RNA, H/ACA Box 1B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA1B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA1B Gene

Genomics for SNORA1B Gene

Regulatory Elements for SNORA1B Gene

Enhancers for SNORA1B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H055901 1.3 Ensembl ENCODE dbSUPER 0.7 +1.2 1180 2 HDAC1 TBP JUN MAX ZNF316 POLR2A EED RCOR1 NFE2 MAFK LYN TGS1 GC08M055904 SNORA1B ENSG00000254325
GH08H055917 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -16.2 -16176 3 HDAC1 TBL1XR1 YBX1 TCF12 ZNF121 ZNF766 GATA2 EGR1 ATF7 ETV6 LYN GC08P055928 GC08M055904 SNORA1B
GH08H055905 0.9 Ensembl ENCODE dbSUPER 0.7 -3.9 -3863 2 GATA3 STAT1 PENK LYN GC08M055904 SNORA1B GC08P055928
GH08H055921 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -23.5 -23459 10 HDGF PKNOX1 SIN3A ZNF143 ATF7 RUNX3 JUNB REST ZNF592 GLIS1 LYN RPS20 GC08P055928 SNORA1B GC08M055904
GH08H055913 1.1 ENCODE dbSUPER 0.4 -11.4 -11395 1 HDAC1 HDGF PKNOX1 TBL1XR1 ARNT NFRKB NFXL1 ZBTB40 TCF12 GATA2 GC08M055904 GC08P055928 SNORA1B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA1B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA1B Gene

Chromosome:
8
Start:
55,902,723 bp from pter
End:
55,902,855 bp from pter
Size:
133 bases
Orientation:
Minus strand

Genomic View for SNORA1B Gene

Genes around SNORA1B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA1B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SNORA1B Gene

Proteins for SNORA1B Gene

Post-translational modifications for SNORA1B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA1B Gene

Domains & Families for SNORA1B Gene

Gene Families for SNORA1B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA1B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA1B Gene

Function for SNORA1B Gene

Phenotypes From GWAS Catalog for SNORA1B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA1B Gene

Localization for SNORA1B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA1B Gene

Pathways & Interactions for SNORA1B Gene

SuperPathways for SNORA1B Gene

No Data Available

Interacting Proteins for SNORA1B Gene

Gene Ontology (GO) - Biological Process for SNORA1B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA1B Gene

Drugs & Compounds for SNORA1B Gene

No Compound Related Data Available

Transcripts for SNORA1B Gene

mRNA/cDNA for SNORA1B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA1B Gene

No ASD Table

Relevant External Links for SNORA1B Gene

GeneLoc Exon Structure for
SNORA1B
ECgene alternative splicing isoforms for
SNORA1B

Expression for SNORA1B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA1B Gene

Orthologs for SNORA1B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA1B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA1 34
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22620 34
  • 83 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA1 34 34
  • 78 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA1 34
  • 75 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA1 34
  • 70 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA1 34
  • 68 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA1 34
  • 61 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA1 34
  • 62 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA1 34
  • 55 (a)
OneToMany
Species where no ortholog for SNORA1B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA1B Gene

ENSEMBL:
Gene Tree for SNORA1B (if available)
TreeFam:
Gene Tree for SNORA1B (if available)

Paralogs for SNORA1B Gene

No data available for Paralogs for SNORA1B Gene

Variants for SNORA1B Gene

Relevant External Links for SNORA1B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA1B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA1B Gene

Disorders for SNORA1B Gene

Relevant External Links for SNORA1B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA1B

No disorders were found for SNORA1B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA1B Gene

Publications for SNORA1B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 60

Products for SNORA1B Gene

Sources for SNORA1B Gene

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