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Aliases for SNORA19 Gene

Subcategory (RNA class) for SNORA19 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA19 Gene

  • Small Nucleolar RNA, H/ACA Box 19 2 3 5
  • ACA19 Small Nucleolar RNA 3
  • ACA19 3

External Ids for SNORA19 Gene

Previous GeneCards Identifiers for SNORA19 Gene

  • GC10M120813
  • GC10M120815
  • GC10M120818
  • GC10M114448
  • GC10M120821
  • GC10M120825
  • GC10M120828
  • GC10M119061

Summaries for SNORA19 Gene

GeneCards Summary for SNORA19 Gene

SNORA19 (Small Nucleolar RNA, H/ACA Box 19) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA19 Gene

Genomics for SNORA19 Gene

Regulatory Elements for SNORA19 Gene

Enhancers for SNORA19 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F119089 1.8 FANTOM5 Ensembl ENCODE 11.7 -30.8 -30805 3.0 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 SEC23IP RPL17P36 MCMBP INPP5F ENSG00000222588 SNORA19 NANOS1 ENSG00000271343 GC10P119080
GH10F119111 1.2 Ensembl ENCODE 11.5 -53.4 -53370 3.8 ATF1 MLX ARID4B ZNF48 YY1 FOS ZHX2 MXD4 PPARG KAT8 PHACTR2P1 EIF3A SNORA19 ENSG00000222588 NANOS1 FAM45A GC10P119111 SFXN4
GH10F119100 1 Ensembl ENCODE 11.7 -41.0 -41009 2.1 ZFHX2 ZNF366 SCRT2 ZNF600 EGR2 ZNF687 ZNF362 CEBPB ZFP37 ZEB2 SFXN4 EIF3A SNORA19 ENSG00000222588 NANOS1 PIR48765 ENSG00000271343
GH10F119006 1.1 Ensembl ENCODE 10.6 +53.3 53281 1.7 HDAC1 PKNOX1 SIN3A RAD21 ZBTB40 BRCA1 SCRT2 RCOR1 FOS ZNF263 SNORA19 ENSG00000222588 EIF3A NANOS1 ENSG00000229272 PIR62502
GH10F119022 0.8 Ensembl ENCODE 11.3 +36.8 36834 1.4 SCRT1 GATA3 SCRT2 SIN3A ZIC2 NANOS1 ENSG00000222588 SNORA19 EIF3A PIR62502 ENSG00000229272
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA19 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA19 Gene

Chromosome:
10
Start:
119,060,011 bp from pter
End:
119,060,138 bp from pter
Size:
128 bases
Orientation:
Minus strand

Genomic View for SNORA19 Gene

Genes around SNORA19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA19 Gene

Proteins for SNORA19 Gene

Post-translational modifications for SNORA19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA19 Gene

Domains & Families for SNORA19 Gene

Gene Families for SNORA19 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA19: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA19 Gene

Function for SNORA19 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA19 Gene

Localization for SNORA19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA19 Gene

Pathways & Interactions for SNORA19 Gene

SuperPathways for SNORA19 Gene

No Data Available

Interacting Proteins for SNORA19 Gene

Gene Ontology (GO) - Biological Process for SNORA19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA19 Gene

Transcripts for SNORA19 Gene

mRNA/cDNA for SNORA19 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA19 Gene

Small nucleolar RNA, H/ACA box 19:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA19 Gene

No ASD Table

Relevant External Links for SNORA19 Gene

GeneLoc Exon Structure for
SNORA19
ECgene alternative splicing isoforms for
SNORA19

Expression for SNORA19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA19 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA19 Gene:

SNORA19

SOURCE GeneReport for Unigene cluster for SNORA19 Gene:

Hs.688653
genes like me logo Genes that share expression patterns with SNORA19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA19 Gene

Orthologs for SNORA19 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA19 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA19 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA19 35
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA19 35 35
  • 90 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23658 35
  • 89 (a)
OneToMany
Snora19 35
  • 89 (a)
OneToMany
Gm24625 35
  • 81 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA19 35
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA19 35 35 35 35
  • 81 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA19 35
  • 80 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA19 35
  • 74 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA19 35
  • 66 (a)
OneToMany
Species where no ortholog for SNORA19 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA19 Gene

ENSEMBL:
Gene Tree for SNORA19 (if available)
TreeFam:
Gene Tree for SNORA19 (if available)

Paralogs for SNORA19 Gene

No data available for Paralogs for SNORA19 Gene

Variants for SNORA19 Gene

Sequence variations from dbSNP and Humsavar for SNORA19 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10787901 -- 119,059,941(+) ATCCT(A/G)GTTGT intron-variant, downstream-variant-500B
rs10787902 -- 119,059,946(+) AGTTG(C/T)TGTAA intron-variant, downstream-variant-500B
rs111695581 -- 119,061,825(+) ACATA(A/G)CGGTG intron-variant, upstream-variant-2KB
rs112847689 -- 119,061,128(+) ACATA(A/G)GACAA intron-variant, upstream-variant-2KB
rs115422210 -- 119,061,850(+) CATAT(C/T)ACCCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA19 Gene

Variant ID Type Subtype PubMed ID
nsv1041093 CNV gain 25217958
nsv825582 CNV gain 20364138

Relevant External Links for SNORA19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA19 Gene

Disorders for SNORA19 Gene

Relevant External Links for SNORA19

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA19

No disorders were found for SNORA19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA19 Gene

Publications for SNORA19 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 3 64

Products for SNORA19 Gene

Sources for SNORA19 Gene

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