Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORA17B Gene

Subcategory (RNA class) for SNORA17B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA17B Gene

  • Small Nucleolar RNA, H/ACA Box 17B 2 3 5
  • Small Nucleolar RNA, H/ACA Box 43 2 3
  • ACA43 SnoRNA 3
  • SNORA43 3
  • ACA43 3

External Ids for SNORA17B Gene

ORGUL Members for SNORA17B Gene

Previous HGNC Symbols for SNORA17B Gene

  • SNORA43

Previous GeneCards Identifiers for SNORA17B Gene

  • GC09M136733
  • GC09M136736
  • GC09M136742
  • GC09M136748

Summaries for SNORA17B Gene

GeneCards Summary for SNORA17B Gene

SNORA17B (Small Nucleolar RNA, H/ACA Box 17B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA17B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA17B Gene

Genomics for SNORA17B Gene

Regulatory Elements for SNORA17B Gene

Enhancers for SNORA17B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H136724 0.8 ENCODE 0.7 +3.2 3176 0 HNRNPUL1 KLF1 CHD7 ZIC2 BCL11B ZFHX2 GLIS2 POLR2A ZNF600 KLF8 EHMT1 SNHG7 GC09M136751 SNORA17B FAM69B
GH09H136726 0.8 ENCODE 0.7 +2.9 2906 0 KLF1 FUS CHD7 ZIC2 ZNF2 HIC1 ZFHX2 GLIS2 POLR2A SCRT2 INPP5E ANAPC2 DPH7 EHMT1 SNAPC4 MAN1B1 EXD3 GC09M136751 SNORA17B FAM69B
GH09H136723 0.7 ENCODE 0.7 +2.8 2816 0 FUS REST ZBTB8A SMARCB1 ZNF2 OSR2 HIC1 ZFHX2 POLR2A MYNN INPP5E ANAPC2 DPH7 EHMT1 SNAPC4 MAN1B1 EXD3 SNORA17B GC09M136751 FAM69B
GH09H136722 0.7 ENCODE 0.7 +3.3 3262 0 HNRNPUL1 KLF1 CHD7 BCL11B ZFHX2 GLIS2 POLR2A ZNF600 KLF8 DEK EHMT1 SNHG7 GC09M136751 SNORA17B FAM69B
GH09H136713 1.1 FANTOM5 ENCODE 0.4 +11.8 11799 3 CTCF KLF1 SREBF2 ZNF223 ZIC2 BCL11B RARA ZNF121 ZNF766 GLIS2 EGFL7 LCN8 FAM69B NPDC1 INPP5E SNAPC4 GC09M136751 SNORA17B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA17B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA17B Gene

Chromosome:
9
Start:
136,726,104 bp from pter
End:
136,726,239 bp from pter
Size:
136 bases
Orientation:
Minus strand

Genomic View for SNORA17B Gene

Genes around SNORA17B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA17B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA17B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA17B Gene

Proteins for SNORA17B Gene

Post-translational modifications for SNORA17B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA17B Gene

Domains & Families for SNORA17B Gene

Gene Families for SNORA17B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA17B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA17B Gene

Function for SNORA17B Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA17B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA17B Gene

Localization for SNORA17B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA17B Gene

Pathways & Interactions for SNORA17B Gene

SuperPathways for SNORA17B Gene

No Data Available

Interacting Proteins for SNORA17B Gene

Gene Ontology (GO) - Biological Process for SNORA17B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA17B Gene

Drugs & Compounds for SNORA17B Gene

No Compound Related Data Available

Transcripts for SNORA17B Gene

mRNA/cDNA for SNORA17B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA17B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA17B Gene

No ASD Table

Relevant External Links for SNORA17B Gene

GeneLoc Exon Structure for
SNORA17B
ECgene alternative splicing isoforms for
SNORA17B

Expression for SNORA17B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA17B Gene:

SNORA17B
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA17B Gene

Orthologs for SNORA17B Gene

Evolution for SNORA17B Gene

ENSEMBL:
Gene Tree for SNORA17B (if available)
TreeFam:
Gene Tree for SNORA17B (if available)

No data available for Orthologs for SNORA17B Gene

Paralogs for SNORA17B Gene

No data available for Paralogs for SNORA17B Gene

Variants for SNORA17B Gene

Sequence variations from dbSNP and Humsavar for SNORA17B Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000640987 -- 136,728,204(+) CGCCG(A/C)GCCTT upstream-variant-2KB
rs1001474965 -- 136,725,756(+) TACCC(A/G)GGGCC intron-variant, nc-transcript-variant, downstream-variant-500B
rs1001476974 -- 136,728,116(+) GAGGC(A/G)CTCGA nc-transcript-variant, upstream-variant-2KB
rs1004701626 -- 136,725,856(+) CTGTT(C/G)TTAAT intron-variant, nc-transcript-variant, downstream-variant-500B
rs1006054149 -- 136,725,764(+) GCCCT(C/T)CCTTT intron-variant, nc-transcript-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORA17B Gene

Variant ID Type Subtype PubMed ID
esv2422220 CNV deletion 17116639
esv2759720 CNV loss 17122850
esv3891732 CNV loss 25118596
nsv469918 CNV loss 18288195
nsv6769 CNV insertion 18451855
nsv8579 CNV gain 18304495
nsv951203 CNV deletion 24416366

Relevant External Links for SNORA17B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA17B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA17B Gene

Disorders for SNORA17B Gene

Relevant External Links for SNORA17B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA17B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA17B

No disorders were found for SNORA17B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA17B Gene

Publications for SNORA17B Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 60
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 60
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 60
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for SNORA17B Gene

Sources for SNORA17B Gene

Content
Loading form....