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Aliases for SNORA16B Gene

Subcategory (RNA class) for SNORA16B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA16B Gene

  • Small Nucleolar RNA, H/ACA Box 16B 2 3 5
  • U98b 3

External Ids for SNORA16B Gene

ORGUL Members for SNORA16B Gene

Previous GeneCards Identifiers for SNORA16B Gene

  • GC01U901235
  • GC01P210593
  • GC01P212526
  • GC01P183201

Summaries for SNORA16B Gene

GeneCards Summary for SNORA16B Gene

SNORA16B (Small Nucleolar RNA, H/ACA Box 16B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA16B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA16B Gene

Genomics for SNORA16B Gene

Regulatory Elements for SNORA16B Gene

Enhancers for SNORA16B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H211646 1.8 FANTOM5 Ensembl ENCODE dbSUPER 15.9 -704.2 -704183 4 ARID4B ZNF143 FOS NFYC REST PPARG NFIL3 MIER3 MAFF ZNF184 SNORA16B SLC30A1 RD3 ENSG00000223649 NEK2 LOC91548 ENSG00000228792 FDPSP8
GH01H211914 1.5 Ensembl ENCODE dbSUPER 16 -434.5 -434536 6 PKNOX1 FOXA2 ZFP64 ARID4B YY1 TCF12 FOS ATF7 MCM3 NFIL3 LPGAT1 LOC102723727 SNORA16B TRAF5 ENSG00000212187 ENSG00000229832 INTS7 ENSG00000233626 PIR53279
GH01H212749 1.1 Ensembl ENCODE 16 +397.3 397304 1 YBX3 ELF3 HDGF ARNT YBX1 RAD21 RFX5 ZNF143 ATF7 RCOR1 TATDN3 SNORA16B BATF3 ANGEL2 FLVCR1 PIR52879 NSL1
GH01H212689 0.7 FANTOM5 16 +336.8 336795 0 YBX3 HDGF MCM3 YY2 ZNF473 ZNF493 ZSCAN4 TSC22D4 CDC5L ZNF274 SNORA16B TMEM206 INTS7 ENSG00000229832 TATDN3 BATF3 GC01P212693 LOC102723761
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA16B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA16B Gene

Chromosome:
1
Start:
212,352,816 bp from pter
End:
212,352,950 bp from pter
Size:
135 bases
Orientation:
Plus strand

Genomic View for SNORA16B Gene

Genes around SNORA16B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA16B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA16B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA16B Gene

Proteins for SNORA16B Gene

Post-translational modifications for SNORA16B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA16B Gene

Domains & Families for SNORA16B Gene

Gene Families for SNORA16B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA16B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA16B Gene

Function for SNORA16B Gene

Phenotypes From GWAS Catalog for SNORA16B Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA16B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA16B Gene

Localization for SNORA16B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA16B Gene

Pathways & Interactions for SNORA16B Gene

SuperPathways for SNORA16B Gene

No Data Available

Interacting Proteins for SNORA16B Gene

Gene Ontology (GO) - Biological Process for SNORA16B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA16B Gene

Drugs & Compounds for SNORA16B Gene

No Compound Related Data Available

Transcripts for SNORA16B Gene

mRNA/cDNA for SNORA16B Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA16B Gene

Small nucleolar RNA, H/ACA box 16B:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORA16B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA16B Gene

No ASD Table

Relevant External Links for SNORA16B Gene

GeneLoc Exon Structure for
SNORA16B
ECgene alternative splicing isoforms for
SNORA16B

Expression for SNORA16B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA16B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA16B Gene:

SNORA16B

SOURCE GeneReport for Unigene cluster for SNORA16B Gene:

Hs.707958
genes like me logo Genes that share expression patterns with SNORA16B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA16B Gene

Orthologs for SNORA16B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA16B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA16 34
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA16 34
  • 87 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORA16 34
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23454 34
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA16 34
  • 72 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA16 34
  • 60 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA16 34
  • 63 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA16 34
  • 62 (a)
ManyToMany
Species where no ortholog for SNORA16B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA16B Gene

ENSEMBL:
Gene Tree for SNORA16B (if available)
TreeFam:
Gene Tree for SNORA16B (if available)

Paralogs for SNORA16B Gene

No data available for Paralogs for SNORA16B Gene

Variants for SNORA16B Gene

Sequence variations from dbSNP and Humsavar for SNORA16B Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000713058 -- 212,352,935(+) AGATT(C/T)TGGGA intron-variant, nc-transcript-variant
rs1001061041 -- 212,352,570(+) TTAGC(C/T)TCCCA intron-variant, upstream-variant-2KB
rs1001859965 -- 212,351,652(+) TGAAC(C/T)CAGGA intron-variant, upstream-variant-2KB
rs1002397254 -- 212,351,914(+) CACCG(C/T)TCTTA intron-variant, upstream-variant-2KB
rs1005842837 -- 212,351,045(+) AGGCC(A/G)AGGCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA16B Gene

Variant ID Type Subtype PubMed ID
nsv549139 CNV gain 21841781

Relevant External Links for SNORA16B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA16B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA16B Gene

Disorders for SNORA16B Gene

Relevant External Links for SNORA16B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA16B

No disorders were found for SNORA16B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA16B Gene

Publications for SNORA16B Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 60
  2. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3 60
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORA16B Gene

Sources for SNORA16B Gene

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