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Aliases for SNORA16A Gene

Subcategory (RNA class) for SNORA16A Gene


Quality Score for this RNA gene is


Aliases for SNORA16A Gene

  • Small Nucleolar RNA, H/ACA Box 16A 2 3 5
  • ACA16 3

External Ids for SNORA16A Gene

Previous GeneCards Identifiers for SNORA16A Gene

  • GC01M028780
  • GC01M028909
  • GC01M027160
  • GC01M028912
  • GC01M028919
  • GC01M028928
  • GC01M028939
  • GC01M028583
  • GC01M028589
  • GC01M028594
  • GC01M028599

Summaries for SNORA16A Gene

GeneCards Summary for SNORA16A Gene

SNORA16A (Small Nucleolar RNA, H/ACA Box 16A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA16A Gene

Genomics for SNORA16A Gene

Regulatory Elements for SNORA16A Gene

Enhancers for SNORA16A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F028579 0.6 ENCODE 0.8 -0.1 -147 4.5 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 PHACTR4 GMEB1 SNHG12 TMEM200B TRNAU1AP SNORA73B ENSG00000237934 ENSG00000231344 SNHG3 LINC01756
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA16A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA16A Gene

28,580,920 bp from pter
28,581,054 bp from pter
135 bases
Minus strand

Genomic View for SNORA16A Gene

Genes around SNORA16A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA16A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA16A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA16A Gene

Proteins for SNORA16A Gene

Post-translational modifications for SNORA16A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA16A Gene

Domains & Families for SNORA16A Gene

Gene Families for SNORA16A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA16A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA16A Gene

Function for SNORA16A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA16A Gene

Localization for SNORA16A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA16A Gene

Pathways & Interactions for SNORA16A Gene

SuperPathways for SNORA16A Gene

No Data Available

Interacting Proteins for SNORA16A Gene

Gene Ontology (GO) - Biological Process for SNORA16A Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA16A Gene

Transcripts for SNORA16A Gene

mRNA/cDNA for SNORA16A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA16A Gene

No ASD Table

Relevant External Links for SNORA16A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA16A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA16A Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA16A Gene

Orthologs for SNORA16A Gene

Evolution for SNORA16A Gene

Gene Tree for SNORA16A (if available)
Gene Tree for SNORA16A (if available)

No data available for Orthologs for SNORA16A Gene

Paralogs for SNORA16A Gene

No data available for Paralogs for SNORA16A Gene

Variants for SNORA16A Gene

Sequence variations from dbSNP and Humsavar for SNORA16A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs12074935 -- 28,581,801(+) GCGGG(C/G)AACGG nc-transcript-variant, upstream-variant-2KB
rs139544766 -- 28,582,765(+) TGCTT(A/G)CACTT upstream-variant-2KB
rs139557553 -- 28,581,905(+) TATAG(A/G)CCGCC upstream-variant-2KB
rs145267767 -- 28,582,366(+) ATCTG(A/G)TCTAG upstream-variant-2KB
rs147386451 -- 28,581,293(+) TTAGC(A/G)AGGCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA16A Gene

Variant ID Type Subtype PubMed ID
nsv545916 CNV gain 21841781

Relevant External Links for SNORA16A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA16A Gene

Disorders for SNORA16A Gene

Relevant External Links for SNORA16A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORA16A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA16A Gene

Publications for SNORA16A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA16A Gene

Sources for SNORA16A Gene

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