Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORA16A Gene

Subcategory (RNA class) for SNORA16A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA16A Gene

  • Small Nucleolar RNA, H/ACA Box 16A 2 3 5
  • ACA16 3

External Ids for SNORA16A Gene

Previous GeneCards Identifiers for SNORA16A Gene

  • GC01M028780
  • GC01M028909
  • GC01M027160
  • GC01M028912
  • GC01M028919
  • GC01M028928
  • GC01M028939
  • GC01M028583
  • GC01M028589
  • GC01M028594
  • GC01M028599
  • GC01M028607
  • GC01M028615
  • GC01M028620

Summaries for SNORA16A Gene

GeneCards Summary for SNORA16A Gene

SNORA16A (Small Nucleolar RNA, H/ACA Box 16A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA16A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA16A Gene

Genomics for SNORA16A Gene

GeneHancer (GH) Regulatory Elements for SNORA16A Gene

Promoters and enhancers for SNORA16A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I028578 Promoter/Enhancer 1.6 Ensembl ENCODE 550.8 -0.1 -146 4.5 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC SNHG12 GC01M028584 GC01M028612 GC01M028618 GC01M028623 GC01M028625 GC01M028628 PIR59489 SNORA16A SNORA44
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA16A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA16A gene promoter:

Genomic Locations for SNORA16A Gene

Genomic Locations for SNORA16A Gene
chr1:28,580,920-28,581,054
(GRCh38/hg38)
Size:
135 bases
Orientation:
Minus strand
chr1:28,905,050-28,909,495
(GRCh37/hg19)

Genomic View for SNORA16A Gene

Genes around SNORA16A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA16A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA16A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA16A Gene

Proteins for SNORA16A Gene

Post-translational modifications for SNORA16A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA16A Gene

Domains & Families for SNORA16A Gene

Gene Families for SNORA16A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA16A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA16A Gene

Function for SNORA16A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA16A Gene

Localization for SNORA16A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA16A Gene

Pathways & Interactions for SNORA16A Gene

SuperPathways for SNORA16A Gene

No Data Available

Interacting Proteins for SNORA16A Gene

Gene Ontology (GO) - Biological Process for SNORA16A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA16A Gene

Drugs & Compounds for SNORA16A Gene

No Compound Related Data Available

Transcripts for SNORA16A Gene

mRNA/cDNA for SNORA16A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA16A Gene

No ASD Table

Relevant External Links for SNORA16A Gene

GeneLoc Exon Structure for
SNORA16A
ECgene alternative splicing isoforms for
SNORA16A

Expression for SNORA16A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA16A Gene:

SNORA16A
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA16A Gene

Orthologs for SNORA16A Gene

Evolution for SNORA16A Gene

ENSEMBL:
Gene Tree for SNORA16A (if available)
TreeFam:
Gene Tree for SNORA16A (if available)

No data available for Orthologs for SNORA16A Gene

Paralogs for SNORA16A Gene

No data available for Paralogs for SNORA16A Gene

Variants for SNORA16A Gene

Sequence variations from dbSNP and Humsavar for SNORA16A Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000018185 -- 28,580,922(-) C/A/G/T non_coding_transcript_variant
rs1001005507 -- 28,582,981(-) C/T upstream_transcript_variant
rs1002530182 -- 28,582,240(-) C/T upstream_transcript_variant
rs1002566049 -- 28,582,068(-) C/T upstream_transcript_variant
rs1002736529 -- 28,580,757(-) A/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA16A Gene

Variant ID Type Subtype PubMed ID
nsv545916 CNV gain 21841781

Additional Variant Information for SNORA16A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA16A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA16A Gene

Disorders for SNORA16A Gene

Additional Disease Information for SNORA16A

No disorders were found for SNORA16A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA16A Gene

Publications for SNORA16A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA16A Gene

Sources for SNORA16A Gene

Content
Loading form....